Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

10258051 .. 10259001

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGGGTAGTCTATCATGTGGCACCTCAACCACCTGCTTCAAATTCAAGGGGTTGGTTGGTTAAGGTCACAGAAGGTGAAGCTCCACTGCACAAAACTCATATCATGTTACATCCTCTCTCTGGAACCCCATTCCCAAAAAACCCGGTAGCTAACCCATTATTACCAAAGGAATTGAACTTTCATGATTTTCGGGTATCTGAGTTGTCGAGAACTTATCACACTCCTTACACTTTTCCGGTGGCAGTGTCCTTGAATTCTGATTGTCCTGCACTTATGATCATTGTTGAAGGAAAATTGTACCACTGCAAATTAGGTGTTGATGGTGAAATTCCAAAGTGCAAGGAAATTGAAAGTCTTATCTCCTCGATCAAATATGTAGATGTTATTTGTCATGAGGGGAAGTTCTATGTGGTCTCCGTTGATGGGAGAACTGTAGTGGTTGATTCTTCTCTGACTGCTAAGATGATTGCAACCCCAATAAGTGCTCCTGTGATTCCTAGAAGTGTTCCTGCTTGCATTCGCAAGAGGTATTTGGTTGAGTCATTCGGAGAACTACTTTTAGTCATATATCTGGCCACTACAACAGAATGTAGGCATCTTTCAGAACTTGGTGTTACATTCGAGATTTTTAAGTTGAATGCAGCTGAGAAGCAATGGGTCGAGATGGCAACTTTGGATGATCGAATATTGTTTGTGGGTGAAGACAGCTGCTTCTCTGTGCTTGCTCGAGACTTTCCTGGTTGCAAAGGGAACTGCATTTATTTCTATGATCCTTGCTCACGTAGATGTAAGTATCGTTCGCAACCACGAATATTCCGTAACATTGGAGTGTTCGACATTAATGGCGGTGGCAGTGGCAGTAATCGTTCACATCGGGTGGATTTTCTTGATGATGGCGGTGACAGTGCAAATATCTTTTGCCTACCCCAAGATTTGGCCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

316

Amino Acids

35.16

Weight (kDa)

7.11

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	14 - 280	8.8e-40	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	937
AciI	CCGC	2 cut(s)	849, 900
AclWI	GGATC	1 cut(s)	767
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	3 cut(s)	43, 256, 330
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	122, 426, 937
AgsI	TTSAA	7 cut(s)	42, 48, 178, 256, 290, 353, 640
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	4 cut(s)	83, 152, 647, 711
AluI	AGCT	4 cut(s)	83, 152, 647, 711
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	421, 726
AlwI	GGATC	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	2 cut(s)	576, 939
ApeKI	GCWGC	2 cut(s)	644, 711
ApoI	RAATTY	3 cut(s)	43, 256, 330
AseI	ATTAAT	1 cut(s)	843
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	89, 338, 713, 914
AvaI	CYCGRG	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	2 cut(s)	656, 698
BccI	CCATC	4 cut(s)	317, 419, 661, 890
BciT130I	CCWGG	1 cut(s)	741
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	421, 726
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	645, 712
BlsI	GCNGC	2 cut(s)	646, 713
Bme1390I	CCNGG	2 cut(s)	146, 741
BmeT110I	CYCGRG	1 cut(s)	729
BmiI	GGNNCC	2 cut(s)	24, 127
BmrFI	CCNGG	2 cut(s)	146, 741
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	942
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 426, 937
Bse3DI	GCAATG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	942
BseGI	GGATG	2 cut(s)	112, 685
BseLI	CCNNNNNNNGG	3 cut(s)	122, 426, 937
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	2 cut(s)	192, 639
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	656, 698
BsgI	GTGCAG	2 cut(s)	74, 255
BshFI	GGCC	2 cut(s)	578, 941
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	490
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	146, 239
BslI	CCNNNNNNNGG	3 cut(s)	122, 426, 937
BsmAI	GTCTC	2 cut(s)	421, 726
BsmI	GAATGC	2 cut(s)	519, 646
BsnI	GGCC	2 cut(s)	578, 941
Bso31I	GGTCTC	1 cut(s)	421
BsoBI	CYCGRG	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	4 cut(s)	279, 369, 682, 772
BspACI	CCGC	2 cut(s)	849, 900
BspANI	GGCC	2 cut(s)	578, 941
BspCNI	CTCAG	2 cut(s)	193, 640
BspHI	TCATGA	2 cut(s)	184, 394
BspLI	GGNNCC	2 cut(s)	24, 127
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	767
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	942
BssMI	GATC	4 cut(s)	279, 369, 682, 772
BssT1I	CCWWGG	1 cut(s)	942
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	436, 908
BstBAI	YACGTR	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	517, 726
BstDEI	CTNAG	3 cut(s)	201, 462, 648
BstF5I	GGATG	2 cut(s)	112, 685
BstKTI	GATC	4 cut(s)	282, 372, 685, 775
BstMAI	GTCTC	2 cut(s)	421, 726
BstMBI	GATC	4 cut(s)	279, 369, 682, 772
BstNI	CCWGG	1 cut(s)	741
BstSCI	CCNGG	2 cut(s)	144, 739
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	656, 698
BstV2I	GAAGAC	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	578, 941
BtsCI	GGATG	2 cut(s)	112, 685
BtsI	GCAGTG	4 cut(s)	86, 252, 304, 862
BtsIMutI	CAGTG	5 cut(s)	86, 252, 304, 862, 913
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	517, 726
CciI	TCATGA	2 cut(s)	184, 394
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	5 cut(s)	17, 106, 185, 395, 948
CviJI	RGCY	6 cut(s)	83, 152, 578, 647, 711, 941
CviKI_1	RGCY	6 cut(s)	83, 152, 578, 647, 711, 941
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	201, 462, 648
DpnI	GATC	4 cut(s)	281, 371, 684, 774
DpnII	GATC	4 cut(s)	279, 369, 682, 772
EaeI	YGGCCR	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	942
Eco31I	GGTCTC	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	729
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	942
ErhI	CCWWGG	1 cut(s)	942
FaeI	CATG	5 cut(s)	20, 109, 188, 398, 951
FatI	CATG	5 cut(s)	16, 105, 184, 394, 947
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	645, 712
FokI	GGATG	2 cut(s)	99, 692
Fsp4HI	GCNGC	2 cut(s)	645, 712
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	2 cut(s)	645, 712
HaeIII	GGCC	2 cut(s)	578, 941
HapII	CCGG	2 cut(s)	146, 239
Hin1II	CATG	5 cut(s)	20, 109, 188, 398, 951
HinfI	GANTC	3 cut(s)	446, 496, 542
HpaII	CCGG	2 cut(s)	146, 239
HphI	GGTGA	4 cut(s)	89, 338, 713, 914
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	5 cut(s)	202, 262, 456, 551, 607
Hpy188III	TCNNGA	8 cut(s)	123, 185, 210, 395, 625, 664, 731, 890
Hpy8I	GTNNAC	1 cut(s)	872
HpyAV	CCTTC	2 cut(s)	68, 284
HpyCH4III	ACNGT	2 cut(s)	436, 908
HpyCH4IV	ACGT	1 cut(s)	784
HpyF3I	CTNAG	3 cut(s)	201, 462, 648
HpySE526I	ACGT	1 cut(s)	784
Hsp92II	CATG	5 cut(s)	20, 109, 188, 398, 951
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	279, 369, 682, 772
LmnI	GCTCC	2 cut(s)	88, 493
Lsp1109I	GCAGC	2 cut(s)	656, 698
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	5 cut(s)	67, 108, 616, 821, 902
MalI	GATC	4 cut(s)	281, 371, 684, 774
MboI	GATC	4 cut(s)	279, 369, 682, 772
MboII	GAAGA	2 cut(s)	441, 716
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	7 cut(s)	43, 173, 256, 296, 311, 330, 348
MluNI	TGGCCA	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	551
MnlI	CCTC	5 cut(s)	36, 126, 376, 391, 522
Mox20I	TGGCCA	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	3 cut(s)	63, 633, 843
MslI	CAYNNNNRTG	2 cut(s)	787, 830
Msp20I	TGGCCA	1 cut(s)	578
MspA1I	CMGCKG	2 cut(s)	647, 711
MspI	CCGG	2 cut(s)	146, 239
MspR9I	CCNGG	2 cut(s)	146, 741
Mva1269I	GAATGC	2 cut(s)	519, 646
MvaI	CCWGG	1 cut(s)	741
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	4 cut(s)	279, 369, 682, 772
NlaIII	CATG	5 cut(s)	20, 109, 188, 398, 951
NlaIV	GGNNCC	2 cut(s)	24, 127
NmuCI	GTSAC	2 cut(s)	67, 902
PaeR7I	CTCGAG	1 cut(s)	729
PagI	TCATGA	2 cut(s)	184, 394
PaqCI	CACCTGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	817
PctI	GAATGC	2 cut(s)	519, 646
PfeI	GAWTC	2 cut(s)	446, 496
PflMI	CCANNNNNTGG	1 cut(s)	937
PkrI	GCNGC	2 cut(s)	646, 713
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Ppu21I	YACGTR	1 cut(s)	785
PshBI	ATTAAT	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	2 cut(s)	24, 127
PsrI	GAACNNNNNNTAC	2 cut(s)	784, 816
PvuII	CAGCTG	2 cut(s)	647, 711
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	2 cut(s)	787, 830
SaqAI	TTAA	3 cut(s)	63, 633, 843
SatI	GCNGC	2 cut(s)	645, 712
Sau3AI	GATC	4 cut(s)	279, 369, 682, 772
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	146, 741
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	729
SlaI	CTCGAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	2 cut(s)	787, 830
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
Sse9I	AATT	7 cut(s)	43, 173, 256, 296, 311, 330, 348
SsiI	CCGC	2 cut(s)	849, 900
SspI	AATATT	2 cut(s)	690, 816
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	144, 739
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	2 cut(s)	436, 908
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	7 cut(s)	209, 368, 624, 663, 685, 730, 837
TasI	AATT	7 cut(s)	43, 173, 256, 296, 311, 330, 348
TfiI	GAWTC	2 cut(s)	446, 496
Tru1I	TTAA	3 cut(s)	63, 633, 843
Tru9I	TTAA	3 cut(s)	63, 633, 843
TscAI	CASTG	5 cut(s)	93, 252, 311, 862, 913
TseFI	GTSAC	2 cut(s)	67, 902
TseI	GCWGC	2 cut(s)	644, 711
Tsp45I	GTSAC	2 cut(s)	67, 902
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	409, 809
TspRI	CASTG	5 cut(s)	93, 252, 311, 862, 913
Van91I	CCANNNNNTGG	1 cut(s)	937
VspI	ATTAAT	1 cut(s)	843
XapI	RAATTY	3 cut(s)	43, 256, 330
XhoI	CTCGAG	1 cut(s)	729
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.