MD15G1237600.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
19548224 .. 19549390
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1237600.v1.1.491

Sequence Viewer

Length: 1167 bp
ATGGCGAGTGGTGCAGATAATATCCCACACGAACTGTTAGCGAACATTGGAAACCGCCTCAACACTAAAACCGATGTTTCTAGATTCCGTGCGGTCTGTAAGTCATGGCGGTCCTCTATTCCTCCCTTCAAGAACCTGCTCCAGTTACCCTCAGAAGTGTGGTTTGCAGTCGGAGAGGATGGCATAGATAGTTATTGCGTAGGCTTTACCCTCGTCGAGAGCGCAGTCTATCATATCGCACCTCCCACGGATGATGATCCCCGGAAAAGAGGTTGGTTGATTAATGTCAAAGAAGTAGGTACTGATCAGTTCAGTGAACAACCAACTCATCGCATGTTGCATCCGCTTTCCCGCTTATTTGGAGGGCAGCCCAAGTCCTTGCCAAAGGTGTTCAACTTAATGGAATTTAGGGTTTTTGAAGTGACCAAAATGTATAGTCTAGTATACGATCATGAGATGCCTGATGATCATTTGAAGGTGGCCGCATCCTTGAATCTCGATTTCCCTGCTGTCATGGCGATTGATCCATTCGGAACGTTATATTACGGAGAGCTAGGTGGTGATGTCGTAGAGTGCATCAACTTCCCTTTGAAGTTGGACGACTTATACCCTGGTTTTCAAGATGTTATTTTTTACAAAGGAAGGTTTTGTGCTGTGTGTCGTGACGGGAGATCTGTAGGGGTTGATTCTTGTCTGAATACTGAACTGATTGCATCTCCATTGGCGACTAGCTCTTGCCATGACGACAAGAGGAAGAAGAAGTTGGTGGAGTCGTTGGGAGAGCTGCTTTTAGTCGATATGTATTTGTATGGCAAGCCGTTGGACTTTACATTCGAGATTTTTAAGCTGGACGCTCACAAGAAGCAATGGGCTAAGCTTGAGGCTCAGGCTTTGGATGATCGAATATTGGTCCTCGGAGATGACGGCTGCTACTCCCTTTCTGCTCGAGATTTCCCGGGAGTCGAGGGGAGATGTATTTATTTCAAAGAGGCGAGTTACAAGTGCAATGAGTTGGAAAACATGTCCGGAGAAATTGCAGTGTACAGCTTGGATTCAGGCCGTGTCTCGCAGATAACTGATTTTCCAGGTTTGAACATATTTTGTCCACCCACAACCTGGAGATGGCGCATCATGAACAAGGCAGCGAGGAAGAGAAAGATGTGGTAA

Protein Analysis

389

Amino Acids

43.95

Weight (kDa)

5.83

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 89 - 348 4.2e-24 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 1116
AccI GTMKAC 1 cut(s) 444
AccIII TCCGGA 1 cut(s) 1025
AciI CCGC 6 cut(s) 55, 92, 109, 344, 352, 483
AclI AACGTT 1 cut(s) 536
AclWI GGATC 2 cut(s) 251, 518
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 404
AfaI GTAC 2 cut(s) 301, 1043
AfiI CCNNNNNNNGG 2 cut(s) 1116, 1122
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 9 cut(s) 130, 394, 419, 475, 493, 592, 620, 985, 1093
AjnI CCWGG 3 cut(s) 610, 1084, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AluBI AGCT 6 cut(s) 553, 732, 784, 847, 877, 1047
AluI AGCT 6 cut(s) 553, 732, 784, 847, 877, 1047
Alw26I GTCTC 1 cut(s) 1069
AlwI GGATC 2 cut(s) 251, 518
Ama87I CYCGRG 2 cut(s) 945, 955
Aor13HI TCCGGA 1 cut(s) 1025
AoxI GGCC 2 cut(s) 480, 1057
ApeKI GCWGC 4 cut(s) 367, 784, 927, 1142
ApoI RAATTY 1 cut(s) 404
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
AseI ATTAAT 1 cut(s) 282
AspLEI GCGC 2 cut(s) 224, 1128
AspS9I GGNCC 2 cut(s) 111, 910
AsuC2I CCSGG 3 cut(s) 262, 956, 957
AsuHPI GGTGA 1 cut(s) 572
AvaI CYCGRG 2 cut(s) 945, 955
AvaII GGWCC 2 cut(s) 111, 910
BbvI GCAGC 4 cut(s) 379, 771, 914, 1154
BccI CCATC 2 cut(s) 173, 1116
BceAI ACGGC 3 cut(s) 802, 940, 1044
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 3 cut(s) 612, 1086, 1117
BclI TGATCA 2 cut(s) 304, 466
BcnI CCSGG 3 cut(s) 262, 956, 957
BcoDI GTCTC 1 cut(s) 1069
BfaI CTAG 4 cut(s) 81, 440, 554, 729
BfmI CTRYAG 1 cut(s) 675
BfuAI ACCTGC 1 cut(s) 144
BglII AGATCT 1 cut(s) 671
BisI GCNGC 5 cut(s) 368, 483, 785, 928, 1143
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 5 cut(s) 369, 484, 786, 929, 1144
Bme1390I CCNGG 6 cut(s) 262, 612, 956, 957, 1086, 1117
Bme18I GGWCC 2 cut(s) 111, 910
BmeT110I CYCGRG 2 cut(s) 945, 955
BmgT120I GGNCC 2 cut(s) 111, 910
BmrFI CCNGG 6 cut(s) 262, 612, 956, 957, 1086, 1117
BmsI GCATC 6 cut(s) 349, 447, 494, 585, 722, 1137
BpmI CTGGAG 2 cut(s) 125, 1138
Bpu10I CCTNAGC 1 cut(s) 885
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 899
BpuMI CCSGG 3 cut(s) 262, 956, 957
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 5 cut(s) 246, 260, 610, 913, 955
BsaWI WCCGGW 1 cut(s) 1025
Bsc4I CCNNNNNNNGG 2 cut(s) 1116, 1122
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 2 cut(s) 872, 1012
Bse8I GATNNNNATC 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 1025
BseBI CCWGG 3 cut(s) 612, 1086, 1117
BseDI CCNNGG 5 cut(s) 246, 260, 610, 913, 955
BseGI GGATG 5 cut(s) 184, 256, 340, 485, 901
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 1116, 1122
BseMI GCAATG 2 cut(s) 872, 1012
BseMII CTCAG 2 cut(s) 165, 899
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 379, 771, 914, 1154
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 2 cut(s) 482, 1059
BsiHKCI CYCGRG 2 cut(s) 945, 955
BsiSI CCGG 3 cut(s) 262, 956, 1026
BslI CCNNNNNNNGG 2 cut(s) 1116, 1122
BsmAI GTCTC 1 cut(s) 1069
BsnI GGCC 2 cut(s) 482, 1059
BsoBI CYCGRG 2 cut(s) 945, 955
Bsp13I TCCGGA 1 cut(s) 1025
Bsp1407I TGTACA 1 cut(s) 1041
Bsp143I GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
Bsp1720I GCTNAGC 1 cut(s) 873
BspACI CCGC 6 cut(s) 55, 92, 109, 344, 352, 483
BspANI GGCC 2 cut(s) 482, 1059
BspCNI CTCAG 2 cut(s) 164, 898
BspEI TCCGGA 1 cut(s) 1025
BspHI TCATGA 2 cut(s) 451, 1131
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 2 cut(s) 251, 518
BsrDI GCAATG 2 cut(s) 872, 1012
BsrGI TGTACA 1 cut(s) 1041
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 5 cut(s) 246, 260, 610, 913, 955
BssMI GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
BssNAI GTATAC 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 445
Bst2UI CCWGG 3 cut(s) 612, 1086, 1117
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 1145
BstAUI TGTACA 1 cut(s) 1041
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 3 cut(s) 151, 873, 885
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 5 cut(s) 184, 256, 340, 485, 901
BstHHI GCGC 2 cut(s) 224, 1128
BstKTI GATC 7 cut(s) 259, 307, 451, 469, 526, 674, 901
BstMAI GTCTC 1 cut(s) 1069
BstMBI GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
BstMWI GCNNNNNNNGC 2 cut(s) 11, 515
BstNI CCWGG 3 cut(s) 612, 1086, 1117
BstNSI RCATGY 2 cut(s) 337, 1024
BstSCI CCNGG 6 cut(s) 260, 610, 954, 955, 1084, 1115
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 4 cut(s) 379, 771, 914, 1154
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BstZ17I GTATAC 1 cut(s) 445
BsuRI GGCC 2 cut(s) 482, 1059
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 314
BtsCI GGATG 5 cut(s) 184, 256, 340, 485, 901
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 2 cut(s) 319, 1044
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 815
CciI TCATGA 2 cut(s) 451, 1131
CfoI GCGC 2 cut(s) 224, 1128
Cfr13I GGNCC 2 cut(s) 111, 910
Cfr9I CCCGGG 1 cut(s) 955
CseI GACGC 1 cut(s) 860
Csp6I GTAC 2 cut(s) 300, 1042
CviAII CATG 7 cut(s) 105, 334, 452, 514, 740, 1021, 1132
CviQI GTAC 2 cut(s) 300, 1042
DdeI CTNAG 3 cut(s) 151, 873, 885
DpnI GATC 7 cut(s) 258, 306, 450, 468, 525, 673, 900
DpnII GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 1145
EarI CTCTTC 1 cut(s) 1145
Eco47I GGWCC 2 cut(s) 111, 910
Eco88I CYCGRG 2 cut(s) 945, 955
EcoRII CCWGG 3 cut(s) 610, 1084, 1115
FaeI CATG 7 cut(s) 108, 337, 455, 517, 743, 1024, 1135
FatI CATG 7 cut(s) 104, 333, 451, 513, 739, 1020, 1131
FauI CCCGC 1 cut(s) 359
FbaI TGATCA 2 cut(s) 304, 466
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 5 cut(s) 368, 483, 785, 928, 1143
FokI GGATG 5 cut(s) 191, 263, 327, 472, 908
Fsp4HI GCNGC 5 cut(s) 368, 483, 785, 928, 1143
FspBI CTAG 4 cut(s) 81, 440, 554, 729
GlaI GCGC 2 cut(s) 223, 1127
GluI GCNGC 5 cut(s) 368, 483, 785, 928, 1143
GsuI CTGGAG 2 cut(s) 125, 1138
HaeIII GGCC 2 cut(s) 482, 1059
HapII CCGG 3 cut(s) 262, 956, 1026
HgaI GACGC 1 cut(s) 860
HhaI GCGC 2 cut(s) 224, 1128
Hin1II CATG 7 cut(s) 108, 337, 455, 517, 743, 1024, 1135
Hin6I GCGC 2 cut(s) 222, 1126
HinP1I GCGC 2 cut(s) 222, 1126
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 6 cut(s) 84, 493, 686, 770, 960, 1052
HpaII CCGG 3 cut(s) 262, 956, 1026
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 4 cut(s) 317, 445, 1042, 1106
Hpy188I TCNGA 5 cut(s) 154, 173, 533, 696, 917
Hpy8I GTNNAC 4 cut(s) 317, 445, 1042, 1106
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 136, 469, 636
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 7 cut(s) 14, 167, 340, 576, 713, 1005, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 515
HpyF3I CTNAG 3 cut(s) 151, 873, 885
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 7 cut(s) 108, 337, 455, 517, 743, 1024, 1135
HspAI GCGC 2 cut(s) 222, 1126
Kpn2I TCCGGA 1 cut(s) 1025
Ksp22I TGATCA 2 cut(s) 304, 466
Kzo9I GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 4 cut(s) 379, 771, 914, 1154
LweI GCATC 6 cut(s) 349, 447, 494, 585, 722, 1137
MaeI CTAG 4 cut(s) 81, 440, 554, 729
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 4 cut(s) 144, 421, 662, 995
MalI GATC 7 cut(s) 258, 306, 450, 468, 525, 673, 900
MboI GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
MboII GAAGA 3 cut(s) 766, 769, 1162
MflI RGATCY 1 cut(s) 671
MluCI AATT 2 cut(s) 404, 1032
MlyI GAGTC 2 cut(s) 779, 969
MmeI TCCRAC 4 cut(s) 151, 576, 801, 993
MroI TCCGGA 1 cut(s) 1025
MseI TTAA 3 cut(s) 282, 398, 843
MspI CCGG 3 cut(s) 262, 956, 1026
MspR9I CCNGG 6 cut(s) 262, 612, 956, 957, 1086, 1117
MvaI CCWGG 3 cut(s) 612, 1086, 1117
MwoI GCNNNNNNNGC 2 cut(s) 11, 515
NciI CCSGG 3 cut(s) 262, 956, 957
NdeII GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
NlaIII CATG 7 cut(s) 108, 337, 455, 517, 743, 1024, 1135
NmuCI GTSAC 2 cut(s) 421, 662
NspI RCATGY 2 cut(s) 337, 1024
PaeR7I CTCGAG 1 cut(s) 945
PagI TCATGA 2 cut(s) 451, 1131
PciI ACATGT 1 cut(s) 1020
PfeI GAWTC 4 cut(s) 84, 493, 686, 1052
PflMI CCANNNNNTGG 1 cut(s) 1116
PkrI GCNGC 5 cut(s) 369, 484, 786, 929, 1144
PleI GAGTC 2 cut(s) 778, 968
PpsI GAGTC 2 cut(s) 778, 968
PscI ACATGT 1 cut(s) 1020
PshBI ATTAAT 1 cut(s) 282
Psp1406I AACGTT 1 cut(s) 536
Psp6I CCWGG 3 cut(s) 610, 1084, 1115
PspGI CCWGG 3 cut(s) 610, 1084, 1115
PspPI GGNCC 2 cut(s) 111, 910
PsuI RGATCY 1 cut(s) 671
RsaI GTAC 2 cut(s) 301, 1043
RsaNI GTAC 2 cut(s) 300, 1042
SaqAI TTAA 3 cut(s) 282, 398, 843
SatI GCNGC 5 cut(s) 368, 483, 785, 928, 1143
Sau3AI GATC 7 cut(s) 256, 304, 448, 466, 523, 671, 898
Sau96I GGNCC 2 cut(s) 111, 910
SchI GAGTC 2 cut(s) 779, 969
ScrFI CCNGG 6 cut(s) 262, 612, 956, 957, 1086, 1117
SfaNI GCATC 6 cut(s) 349, 447, 494, 585, 722, 1137
SfcI CTRYAG 1 cut(s) 675
Sfr274I CTCGAG 1 cut(s) 945
SinI GGWCC 2 cut(s) 111, 910
SlaI CTCGAG 1 cut(s) 945
SmaI CCCGGG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 878, 945
SmoI CTYRAG 2 cut(s) 878, 945
Sse9I AATT 2 cut(s) 404, 1032
SsiI CCGC 6 cut(s) 55, 92, 109, 344, 352, 483
SspI AATATT 1 cut(s) 906
SspMI CTAG 4 cut(s) 81, 440, 554, 729
StyD4I CCNGG 6 cut(s) 260, 610, 954, 955, 1084, 1115
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 1 cut(s) 539
TaqI TCGA 7 cut(s) 216, 498, 795, 834, 901, 946, 963
TasI AATT 2 cut(s) 404, 1032
TatI WGTACW 1 cut(s) 1041
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 4 cut(s) 84, 493, 686, 1052
Tru1I TTAA 3 cut(s) 282, 398, 843
Tru9I TTAA 3 cut(s) 282, 398, 843
TscAI CASTG 2 cut(s) 319, 1044
TseFI GTSAC 2 cut(s) 421, 662
TseI GCWGC 4 cut(s) 367, 784, 927, 1142
Tsp45I GTSAC 2 cut(s) 421, 662
TspDTI ATGAA 1 cut(s) 1148
TspGWI ACGGA 3 cut(s) 77, 263, 561
TspMI CCCGGG 1 cut(s) 955
TspRI CASTG 2 cut(s) 319, 1044
Van91I CCANNNNNTGG 1 cut(s) 1116
VpaK11BI GGWCC 2 cut(s) 111, 910
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 80
XceI RCATGY 2 cut(s) 337, 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 1113
XhoI CTCGAG 1 cut(s) 945
XmaI CCCGGG 1 cut(s) 955
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 4 cut(s) 81, 440, 554, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.