Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

5918100 .. 5923327

Gene Structure 5228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTGAAAGACCAAGATCCGATACATGTGAAAATGAGAGAGTTGAATGTTGGAGCGATCTCCCAGCTGAGTTGTTACAGAGCATTGTAAAGCGGCTTGATGCCAAAGTTGATGTTTCTAGATCCCGTGCTGTTTGTAAATCATGGCGGTTCTCTATTTCTCCTCTGAATGGGAATTCTCCACCTATCAAAGTACATTTCAGTTATACTATCCGGAGAAGAGAACGTCGTATTAAGAAGACAATCTTGCCTCTGAGGATGAGGGTAGTCTATCATGTGGCACCTCAATCTCCTGCTTCAAATTCAAGGGGTTGGTTGGTTAAGGTCACAGAAAGTGAAAAGACATGGCAGAAACCTCTTATCATGTTACATCCTCTTTCTGGATCCCCATTCCCGAAAGGCCCGGTTCCTAACCCATTATTACCAAAGGAACTGAACTTAAATGATTTTCGGGTATCTGAGTTGTCGAAAACTTATCACTCTCCCTGCGCTTATCAGTTGGCAGTGTCCTTGAATTCTGATTTTCCTGCACTTATGATGATTGGTGGTGGAAAATTGTACCACTGCAAATTAGGTGTTGATGGTGAAATTCCAAAGTGCAAGGAAATTAAAAGTCTAACCTCCTCAGTCAACTATGGAGATGTTATTTGCCATGAGGGGAAGTTCTATGTTGTCTCCCTTGATGGGAGAACTATAGTGGTTGATTCTTCTTTGACAGCTAAGATGATTGCGACCCCGATAAGTGCTCCTGTGATTCGGAGAAATATTCCTATTGGCATCGGCAAGAGATATTTGGTGGAGTCATTTGGAGAACTACTTTTAGTTATATATCTGGCCAGTACGACAGAATGTAGGCATCTCTCAGAAGTTGGTGTTGCATTCGAGATTTTCAAGTTGAATGCAGATGAGAAACAATGGGTCGAGATGACGACTTTGGATGACCGGATATTGTTTGTGGGTGAAGACAGCCGCTTCTCTGTGCTTGCTCGAGACTTTCCTGGTTGCAAAGGGAACTGTATTTATTTCTATGATCCTTGCCCAGTAAATTGTAAGTATCATCATATGCCACAAAGATTCAGCAACATTGGAGTGTTCGACATTGGTAGTGGTAGCAATGCCAGTGGTTTACCTCGGTTGCGTTTTCTTGATGATGGTGGTGATGGTGCAAATATCTTTTGCCTACCCCCAGAATTTGCCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

402

Amino Acids

44.88

Weight (kDa)

8.87

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	18 - 51	1.8e-06	F-box-like
Beta-prop_KIB1-4	PF03478	89 - 366	3.5e-37	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	3 cut(s)	94, 148, 970
AclWI	GGATC	5 cut(s)	12, 117, 378, 391, 1025
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	5 cut(s)	175, 301, 514, 588, 1190
AfaI	GTAC	3 cut(s)	195, 560, 841
AfiI	CCNNNNNNNGG	3 cut(s)	170, 380, 684
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	6 cut(s)	47, 300, 306, 514, 892, 898
AjnI	CCWGG	1 cut(s)	997
AluBI	AGCT	2 cut(s)	68, 719
AluI	AGCT	2 cut(s)	68, 719
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	2 cut(s)	679, 984
AlwI	GGATC	5 cut(s)	12, 117, 378, 391, 1025
Ama87I	CYCGRG	1 cut(s)	987
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	2 cut(s)	400, 834
ApoI	RAATTY	5 cut(s)	175, 301, 514, 588, 1190
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	3 cut(s)	596, 971, 1169
AvaI	CYCGRG	1 cut(s)	987
BalI	TGGCCA	1 cut(s)	836
BamHI	GGATCC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	2 cut(s)	245, 969
Bbv12I	GWGCWC	1 cut(s)	748
BccI	CCATC	4 cut(s)	575, 677, 1145, 1154
BciT130I	CCWGG	1 cut(s)	999
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	679, 984
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	2 cut(s)	95, 970
BlsI	GCNGC	2 cut(s)	96, 971
Bme1390I	CCNGG	2 cut(s)	404, 999
BmeT110I	CYCGRG	1 cut(s)	987
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	282, 385, 408
BmrFI	CCNGG	2 cut(s)	404, 999
BmrI	ACTGGG	1 cut(s)	1034
BmsI	GCATC	3 cut(s)	91, 786, 865
BmuI	ACTGGG	1 cut(s)	1034
BpiI	GAAGAC	2 cut(s)	245, 969
BpuMI	CCSGG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	1130, 1197
BsaWI	WCCGGW	2 cut(s)	213, 942
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 380, 684
Bse1I	ACTGG	3 cut(s)	837, 1040, 1119
Bse3DI	GCAATG	1 cut(s)	1120
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	999
BseDI	CCNNGG	2 cut(s)	1130, 1197
BseGI	GGATG	3 cut(s)	264, 370, 943
BseLI	CCNNNNNNNGG	3 cut(s)	170, 380, 684
BseMI	GCAATG	1 cut(s)	1120
BseMII	CTCAG	5 cut(s)	60, 245, 450, 639, 876
BseNI	ACTGG	3 cut(s)	837, 1040, 1119
BseRI	GAGGAG	2 cut(s)	153, 613
BseYI	CCCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	402, 836
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	1 cut(s)	987
BsiSI	CCGG	3 cut(s)	214, 404, 943
BslI	CCNNNNNNNGG	3 cut(s)	170, 380, 684
BsmAI	GTCTC	2 cut(s)	679, 984
BsmI	GAATGC	2 cut(s)	878, 904
BsnI	GGCC	2 cut(s)	402, 836
BsoBI	CYCGRG	1 cut(s)	987
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	5 cut(s)	17, 58, 122, 383, 1030
BspACI	CCGC	3 cut(s)	94, 148, 970
BspANI	GGCC	2 cut(s)	402, 836
BspCNI	CTCAG	5 cut(s)	61, 246, 451, 638, 875
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	282, 385, 408
BspPI	GGATC	5 cut(s)	12, 117, 378, 391, 1025
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	1120
BsrI	ACTGG	3 cut(s)	837, 1040, 1119
BssECI	CCNNGG	2 cut(s)	1130, 1197
BssMI	GATC	5 cut(s)	17, 58, 122, 383, 1030
BssT1I	CCWWGG	1 cut(s)	1197
Bst2UI	CCWGG	1 cut(s)	999
Bst4CI	ACNGT	1 cut(s)	1016
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	984
BstDEI	CTNAG	6 cut(s)	69, 254, 459, 625, 720, 862
BstF5I	GGATG	3 cut(s)	264, 370, 943
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	5 cut(s)	20, 61, 125, 386, 1033
BstMAI	GTCTC	2 cut(s)	679, 984
BstMBI	GATC	5 cut(s)	17, 58, 122, 383, 1030
BstNI	CCWGG	1 cut(s)	999
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	402, 997
BstSFI	CTRYAG	1 cut(s)	693
BstV2I	GAAGAC	2 cut(s)	245, 969
BstX2I	RGATCY	3 cut(s)	17, 122, 383
BstYI	RGATCY	3 cut(s)	17, 122, 383
BsuRI	GGCC	2 cut(s)	402, 836
BtsCI	GGATG	3 cut(s)	264, 370, 943
BtsI	GCAGTG	2 cut(s)	510, 562
BtsIMutI	CAGTG	3 cut(s)	510, 562, 1126
Cac8I	GCNNGC	1 cut(s)	984
CfoI	GCGC	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	3 cut(s)	194, 559, 840
CspCI	CAANNNNNGTGG	2 cut(s)	1102, 1137
CviAII	CATG	7 cut(s)	27, 144, 275, 345, 364, 653, 1203
CviJI	RGCY	7 cut(s)	5, 68, 97, 402, 719, 836, 969
CviKI_1	RGCY	7 cut(s)	5, 68, 97, 402, 719, 836, 969
CviQI	GTAC	3 cut(s)	194, 559, 840
DdeI	CTNAG	6 cut(s)	69, 254, 459, 625, 720, 862
DpnI	GATC	5 cut(s)	19, 60, 124, 385, 1032
DpnII	GATC	5 cut(s)	17, 58, 122, 383, 1030
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	1197
Eco88I	CYCGRG	1 cut(s)	987
EcoRI	GAATTC	2 cut(s)	175, 514
EcoRII	CCWGG	1 cut(s)	997
EcoT14I	CCWWGG	1 cut(s)	1197
ErhI	CCWWGG	1 cut(s)	1197
FaeI	CATG	7 cut(s)	30, 147, 278, 348, 367, 656, 1206
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	7 cut(s)	26, 143, 274, 344, 363, 652, 1202
FauNDI	CATATG	1 cut(s)	1062
Fnu4HI	GCNGC	2 cut(s)	95, 970
FokI	GGATG	3 cut(s)	271, 357, 950
Fsp4HI	GCNGC	2 cut(s)	95, 970
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	2 cut(s)	95, 970
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	402, 836
HapII	CCGG	3 cut(s)	214, 404, 943
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	7 cut(s)	30, 147, 278, 348, 367, 656, 1206
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	704, 754, 800, 1074
HpaII	CCGG	3 cut(s)	214, 404, 943
HphI	GGTGA	3 cut(s)	596, 971, 1169
Hpy166II	GTNNAC	2 cut(s)	631, 1127
Hpy188I	TCNGA	7 cut(s)	22, 168, 255, 460, 520, 759, 865
Hpy188III	TCNNGA	8 cut(s)	120, 214, 381, 394, 883, 922, 989, 1145
Hpy8I	GTNNAC	2 cut(s)	631, 1127
Hpy99I	CGWCG	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	1016
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	7 cut(s)	530, 567, 600, 878, 902, 1005, 1166
HpyF3I	CTNAG	6 cut(s)	69, 254, 459, 625, 720, 862
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	7 cut(s)	30, 147, 278, 348, 367, 656, 1206
HspAI	GCGC	1 cut(s)	489
Kpn2I	TCCGGA	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	17, 58, 122, 383, 1030
LmnI	GCTCC	2 cut(s)	54, 751
LweI	GCATC	3 cut(s)	91, 786, 865
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	3 cut(s)	75, 325, 366
MalI	GATC	5 cut(s)	19, 60, 124, 385, 1032
MboI	GATC	5 cut(s)	17, 58, 122, 383, 1030
MboII	GAAGA	4 cut(s)	231, 250, 699, 974
MflI	RGATCY	3 cut(s)	17, 122, 383
MhlI	GDGCHC	1 cut(s)	748
MlsI	TGGCCA	1 cut(s)	836
MluCI	AATT	9 cut(s)	175, 301, 514, 554, 569, 588, 606, 1045, 1190
MluNI	TGGCCA	1 cut(s)	836
MlyI	GAGTC	1 cut(s)	809
MmeI	TCCRAC	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	836
MroI	TCCGGA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	836
MseI	TTAA	4 cut(s)	234, 321, 440, 609
MslI	CAYNNNNRTG	1 cut(s)	1088
Msp20I	TGGCCA	1 cut(s)	836
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	3 cut(s)	214, 404, 943
MspR9I	CCNGG	2 cut(s)	404, 999
Mva1269I	GAATGC	2 cut(s)	878, 904
MvaI	CCWGG	1 cut(s)	999
NciI	CCSGG	1 cut(s)	404
NdeI	CATATG	1 cut(s)	1062
NdeII	GATC	5 cut(s)	17, 58, 122, 383, 1030
NlaIII	CATG	7 cut(s)	30, 147, 278, 348, 367, 656, 1206
NlaIV	GGNNCC	3 cut(s)	282, 385, 408
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	987
PciI	ACATGT	1 cut(s)	26
PctI	GAATGC	2 cut(s)	878, 904
PfeI	GAWTC	3 cut(s)	704, 754, 1074
PkrI	GCNGC	2 cut(s)	96, 971
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
PscI	ACATGT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	997
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	997
PspN4I	GGNNCC	3 cut(s)	282, 385, 408
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	17, 122, 383
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	3 cut(s)	195, 560, 841
RsaNI	GTAC	3 cut(s)	194, 559, 840
RseI	CAYNNNNRTG	1 cut(s)	1088
SaqAI	TTAA	4 cut(s)	234, 321, 440, 609
SatI	GCNGC	2 cut(s)	95, 970
Sau3AI	GATC	5 cut(s)	17, 58, 122, 383, 1030
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	2 cut(s)	404, 999
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	3 cut(s)	91, 786, 865
SfcI	CTRYAG	1 cut(s)	693
Sfr274I	CTCGAG	1 cut(s)	987
SlaI	CTCGAG	1 cut(s)	987
SmiMI	CAYNNNNRTG	1 cut(s)	1088
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
Sse9I	AATT	9 cut(s)	175, 301, 514, 554, 569, 588, 606, 1045, 1190
SsiI	CCGC	3 cut(s)	94, 148, 970
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	402, 997
StyI	CCWWGG	1 cut(s)	1197
TaaI	ACNGT	1 cut(s)	1016
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	5 cut(s)	467, 882, 921, 988, 1095
TasI	AATT	9 cut(s)	175, 301, 514, 554, 569, 588, 606, 1045, 1190
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	2 cut(s)	97, 972
TfiI	GAWTC	3 cut(s)	704, 754, 1074
Tru1I	TTAA	4 cut(s)	234, 321, 440, 609
Tru9I	TTAA	4 cut(s)	234, 321, 440, 609
TscAI	CASTG	3 cut(s)	510, 569, 1126
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspRI	CASTG	3 cut(s)	510, 569, 1126
XapI	RAATTY	5 cut(s)	175, 301, 514, 588, 1190
XbaI	TCTAGA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	987
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.