Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9322460 .. 9323798

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCTAGTGATCTTTCAGTTGAATTGTTAGAGAAAGTTGGAAAGTGCCTTAACTTGACCAACGATATTTCTCGATTCCGTGCTGTTTGCCGGTCATGGCGGTCCTCTGTTCCTCCCTTTACAAAAAACAAGCAGCAGCTCCTCTCTCCCATCAGAGGTCCCATACAACTCCCCAAGTATCCTGATAGTAATGGGAACTGGCCTAAGATGTTGAACCTCACCAAGAGGGTGATCTATCATGTGTCCCACAGTTCAAGTACATGGGTTGTTACTGTCAAACTAAAAGAATCGGGTGAAATTGATCGTACGCTAGATCCACTCTTTCATTGCCCATTCTCGCGTGAGCAGTTCCCTGAGACATTCCCAGAGGCGTTCAACTTATTGGATGAAGATGTTCTGGTAGTTGAATTGGCAGAAGCTTATGGTCTAAGAGACGTTAGTGAGGCTGGTTGTGATTATAGAGTGGCTATGTCCTTCAATCCTAGTTGTCCTGCACTCATGGTTGTTGTCAATGGAGCGTTGTACCACTGTAATTTAGGTATTGATCCCATTCCAAAGTTAAAACCAGTGGAAGGTCTAGCAGCATACTCTCGGCTCGAAGATGTTATTTATTATGAGGAAAAATTTTATGCTGTTGCCAGTGATGCGATCACAGTAGTGCTGGATTCAAATTCTCTGCAGGTGGTGGATATACTTGTGAAGACTCAGATGTTGGGCCGTGAACGCCACAGGAAGTATTTGGTGGAATCAGCTGGAGATGTTTTTTTGGTTAAGAAAGTGCATCACCTTAACTACAGAGTTTTTAAGTTGAATGCAATTCAGAAGTGCTGGGTTGAGATGGAGGACGATTGGGATTGGGATGGTCGAATATTGATCATAGATTCAGATGATGGCTGCTTCTTTCCTTCTGCTCAAGATTTCCCCAGAATTGGGCATGGGAACAGTAGTTGCGTTTATTTCTATCATCCCAACTATACGCGCTGGGCACAATCTTGCATAAGACTGTCTCCAATATCTGTTTTTGATACAATTTCGGAGGACAAGAAGAATTTGGCCAAATCATCCGGGGAGCTGCTTTTAGCCAATAGAGATGGGTTTGCATCTGTTGCACACATGCTGAATGCTGAAGTTAAATTTAAGGTTTACATGTTGGATGAAACTAGGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

391

Amino Acids

44.41

Weight (kDa)

5.97

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	82 - 322	5e-18	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	670
AccII	CGCG	2 cut(s)	340, 979
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	308, 539
AcoI	YGGCCR	1 cut(s)	1053
AcsI	RAATTY	4 cut(s)	623, 670, 1048, 1133
AcuI	CTGAAG	1 cut(s)	1146
AfaI	GTAC	3 cut(s)	259, 307, 524
AfiI	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	8 cut(s)	23, 214, 255, 376, 407, 478, 669, 811
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	4 cut(s)	139, 419, 752, 1072
AluI	AGCT	4 cut(s)	139, 419, 752, 1072
Alw26I	GTCTC	3 cut(s)	350, 426, 1011
AlwI	GGATC	2 cut(s)	308, 539
AoxI	GGCC	3 cut(s)	200, 715, 1053
ApeKI	GCWGC	5 cut(s)	133, 136, 581, 894, 1072
ApoI	RAATTY	4 cut(s)	623, 670, 1048, 1133
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	981
AspS9I	GGNCC	3 cut(s)	102, 158, 715
AsuC2I	CCSGG	1 cut(s)	1066
AsuHPI	GGTGA	4 cut(s)	211, 241, 305, 776
AvaII	GGWCC	2 cut(s)	102, 158
BaeGI	GKGCMC	1 cut(s)	988
BalI	TGGCCA	1 cut(s)	1055
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	5 cut(s)	145, 148, 593, 881, 1059
BccI	CCATC	5 cut(s)	158, 832, 854, 884, 1085
BceAI	ACGGC	1 cut(s)	702
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	1066
BcoDI	GTCTC	3 cut(s)	350, 426, 1011
BfaI	CTAG	5 cut(s)	6, 311, 483, 578, 1161
BfmI	CTRYAG	2 cut(s)	677, 793
BfuAI	ACCTGC	1 cut(s)	670
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	5 cut(s)	134, 137, 582, 895, 1073
BlsI	GCNGC	5 cut(s)	135, 138, 583, 896, 1074
Bme1390I	CCNGG	1 cut(s)	1066
Bme18I	GGWCC	2 cut(s)	102, 158
BmgT120I	GGNCC	3 cut(s)	102, 158, 715
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	1066
BmsI	GCATC	3 cut(s)	634, 790, 1109
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	897
BpuMI	CCSGG	1 cut(s)	1066
BsaJI	CCNNGG	1 cut(s)	1065
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	3 cut(s)	203, 566, 639
Bse3DI	GCAATG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	1065
BseGI	GGATG	5 cut(s)	391, 865, 964, 1061, 1159
BseLI	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	345, 719
BseNI	ACTGG	3 cut(s)	203, 566, 639
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	5 cut(s)	145, 148, 593, 881, 1059
BseYI	CCCAGC	2 cut(s)	828, 981
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	2 cut(s)	340, 979
BshFI	GGCC	3 cut(s)	202, 717, 1055
BsiSI	CCGG	2 cut(s)	91, 1065
BsiWI	CGTACG	1 cut(s)	305
BslFI	GGGAC	2 cut(s)	144, 229
BslI	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
BsmAI	GTCTC	3 cut(s)	350, 426, 1011
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	144, 229
BsmI	GAATGC	2 cut(s)	817, 1126
BsnI	GGCC	3 cut(s)	202, 717, 1055
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp143I	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	202, 717, 1055
BspCNI	CTCAG	2 cut(s)	346, 718
BspFNI	CGCG	2 cut(s)	340, 979
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	681
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	2 cut(s)	308, 539
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	203, 566, 639
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	1065
BssMI	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
Bst4CI	ACNGT	6 cut(s)	251, 274, 530, 655, 944, 1005
BstAPI	GCANNNNNTGC	1 cut(s)	1106
BstDEI	CTNAG	4 cut(s)	204, 354, 428, 705
BstF5I	GGATG	5 cut(s)	391, 865, 964, 1061, 1159
BstFNI	CGCG	2 cut(s)	340, 979
BstHHI	GCGC	1 cut(s)	981
BstKTI	GATC	7 cut(s)	13, 234, 304, 316, 547, 651, 876
BstMAI	GTCTC	3 cut(s)	350, 426, 1011
BstMBI	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	644, 723, 1106
BstNSI	RCATGY	2 cut(s)	1117, 1150
BstSCI	CCNGG	1 cut(s)	1064
BstSFI	CTRYAG	2 cut(s)	677, 793
BstSLI	GKGCMC	1 cut(s)	988
BstUI	CGCG	2 cut(s)	340, 979
BstV1I	GCAGC	5 cut(s)	145, 148, 593, 881, 1059
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	202, 717, 1055
BtsCI	GGATG	5 cut(s)	391, 865, 964, 1061, 1159
BtsIMutI	CAGTG	3 cut(s)	526, 573, 646
BveI	ACCTGC	1 cut(s)	670
CfoI	GCGC	1 cut(s)	981
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	102, 158, 715
Csp6I	GTAC	3 cut(s)	258, 306, 523
CviAII	CATG	7 cut(s)	96, 239, 261, 499, 935, 1114, 1147
CviQI	GTAC	3 cut(s)	258, 306, 523
DdeI	CTNAG	4 cut(s)	204, 354, 428, 705
DpnI	GATC	7 cut(s)	12, 233, 303, 315, 546, 650, 875
DpnII	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
EaeI	YGGCCR	1 cut(s)	1053
Eco47I	GGWCC	2 cut(s)	102, 158
Eco57I	CTGAAG	1 cut(s)	1146
EcoO109I	RGGNCCY	1 cut(s)	158
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	7 cut(s)	99, 242, 264, 502, 938, 1117, 1150
FaqI	GGGAC	2 cut(s)	144, 229
FatI	CATG	7 cut(s)	95, 238, 260, 498, 934, 1113, 1146
FbaI	TGATCA	1 cut(s)	873
Fnu4HI	GCNGC	5 cut(s)	134, 137, 582, 895, 1073
FokI	GGATG	5 cut(s)	398, 872, 951, 1048, 1166
Fsp4HI	GCNGC	5 cut(s)	134, 137, 582, 895, 1073
FspBI	CTAG	5 cut(s)	6, 311, 483, 578, 1161
GlaI	GCGC	1 cut(s)	980
GluI	GCNGC	5 cut(s)	134, 137, 582, 895, 1073
GsaI	CCCAGC	2 cut(s)	832, 985
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	3 cut(s)	202, 717, 1055
HapII	CCGG	2 cut(s)	91, 1065
HhaI	GCGC	1 cut(s)	981
Hin1II	CATG	7 cut(s)	99, 242, 264, 502, 938, 1117, 1150
Hin6I	GCGC	1 cut(s)	979
HinP1I	GCGC	1 cut(s)	979
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	6 cut(s)	75, 287, 665, 703, 746, 881
HpaII	CCGG	2 cut(s)	91, 1065
HphI	GGTGA	4 cut(s)	211, 241, 305, 776
Hpy166II	GTNNAC	2 cut(s)	722, 1144
Hpy188I	TCNGA	5 cut(s)	155, 708, 822, 886, 1036
Hpy188III	TCNNGA	3 cut(s)	72, 182, 914
Hpy8I	GTNNAC	2 cut(s)	722, 1144
HpyAV	CCTTC	4 cut(s)	484, 566, 915, 1159
HpyCH4III	ACNGT	6 cut(s)	251, 274, 530, 655, 944, 1005
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	7 cut(s)	494, 679, 781, 815, 996, 1100, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	644, 723, 1106
HpyF3I	CTNAG	4 cut(s)	204, 354, 428, 705
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	7 cut(s)	99, 242, 264, 502, 938, 1117, 1150
HspAI	GCGC	1 cut(s)	979
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
LmnI	GCTCC	3 cut(s)	144, 515, 1069
Lsp1109I	GCAGC	5 cut(s)	145, 148, 593, 881, 1059
LweI	GCATC	3 cut(s)	634, 790, 1109
MaeI	CTAG	5 cut(s)	6, 311, 483, 578, 1161
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	7 cut(s)	12, 233, 303, 315, 546, 650, 875
MboI	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
MboII	GAAGA	4 cut(s)	401, 611, 712, 1057
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	988
MlsI	TGGCCA	1 cut(s)	1055
MluNI	TGGCCA	1 cut(s)	1055
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	2 cut(s)	19, 1131
Mox20I	TGGCCA	1 cut(s)	1055
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	1055
MseI	TTAA	7 cut(s)	51, 560, 771, 789, 804, 1131, 1137
MslI	CAYNNNNRTG	1 cut(s)	656
Msp20I	TGGCCA	1 cut(s)	1055
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	91, 1065
MspR9I	CCNGG	1 cut(s)	1066
Mva1269I	GAATGC	2 cut(s)	817, 1126
MvnI	CGCG	2 cut(s)	340, 979
MwoI	GCNNNNNNNGC	3 cut(s)	644, 723, 1106
NciI	CCSGG	1 cut(s)	1066
NdeII	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
NlaIII	CATG	7 cut(s)	99, 242, 264, 502, 938, 1117, 1150
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	571
NspI	RCATGY	2 cut(s)	1117, 1150
OliI	CACNNNNGTG	1 cut(s)	656
PaqCI	CACCTGC	1 cut(s)	670
PciI	ACATGT	1 cut(s)	1146
PctI	GAATGC	2 cut(s)	817, 1126
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	5 cut(s)	75, 287, 665, 746, 881
Pfl23II	CGTACG	1 cut(s)	305
PkrI	GCNGC	5 cut(s)	135, 138, 583, 896, 1074
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	1146
Psp5II	RGGWCCY	1 cut(s)	158
PspFI	CCCAGC	2 cut(s)	828, 981
PspLI	CGTACG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	3 cut(s)	102, 158, 715
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	259, 307, 524
RsaNI	GTAC	3 cut(s)	258, 306, 523
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	7 cut(s)	51, 560, 771, 789, 804, 1131, 1137
SatI	GCNGC	5 cut(s)	134, 137, 582, 895, 1073
Sau3AI	GATC	7 cut(s)	10, 231, 301, 313, 544, 648, 873
Sau96I	GGNCC	3 cut(s)	102, 158, 715
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	1 cut(s)	1066
SduI	GDGCHC	1 cut(s)	988
SfaNI	GCATC	3 cut(s)	634, 790, 1109
SfcI	CTRYAG	2 cut(s)	677, 793
SinI	GGWCC	2 cut(s)	102, 158
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	912
SmoI	CTYRAG	1 cut(s)	912
SsiI	CCGC	1 cut(s)	100
SspI	AATATT	1 cut(s)	870
SspMI	CTAG	5 cut(s)	6, 311, 483, 578, 1161
StyD4I	CCNGG	1 cut(s)	1064
TaaI	ACNGT	6 cut(s)	251, 274, 530, 655, 944, 1005
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	73, 597, 865
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	5 cut(s)	75, 287, 665, 746, 881
Tru1I	TTAA	7 cut(s)	51, 560, 771, 789, 804, 1131, 1137
Tru9I	TTAA	7 cut(s)	51, 560, 771, 789, 804, 1131, 1137
TscAI	CASTG	3 cut(s)	533, 573, 646
TseI	GCWGC	5 cut(s)	133, 136, 581, 894, 1072
TspDTI	ATGAA	3 cut(s)	314, 402, 1170
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	3 cut(s)	533, 573, 646
VpaK11BI	GGWCC	2 cut(s)	102, 158
XapI	RAATTY	4 cut(s)	623, 670, 1048, 1133
XceI	RCATGY	2 cut(s)	1117, 1150
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	5 cut(s)	6, 311, 483, 578, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.