Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

10174692 .. 10180410

Gene Structure 5719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG122200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGACAGAAAGACAAAAATCTGATACATGTGGAAATCAGAGAGGGGAATGTTGGAGTGATCTTCCGGTTGAATTATTACAGAGCATTGCAAAGCGGCTTGATACCAAAATTGATGTTTCAAGATCCCGTGCTGTTTGTAAATCATGGCGGTTCTCTATTCCTCCTCTCACTGTGAACTCTCCACCCATCAAAGTACATCTCGGTAATGTTATCAGGAGAGGAGTACGACTTGTGAAAAAAACAACCCTCGGGATGAGGGTAGTCTATCATGTGGCACCTCAACCACCTGCTTCAAATTCAAGGGGTTGGTTGGTTAAGGTCACAGAAGGTGAAGCTCCACTGGACAAAACTCATATCATGTTACATCCTCTCTCTGGAACCCCATTCCCAAAAAACCCGGTAGCCAACCCATTATTACCAAAGGAATTGAACTTTTATGATTTTCGGGTATCTGAGTTGTCGAGAACTTATCACACTCCTTACACTTTTCCGGTGGCAGTGTCCTTGAATTCTGATTGTCCTGCACTTATGATGATTGTTGAAGGAAAATTGTACCACTGCAAATTAGGTGTTGATGGTGAAATTCCAAAGTGCAAGGAAATTGAAAGTCTTATCTCCTCGATCAAATATGTAGATGTTATTTGTCATGAGGGGAAGTTCTATGTGGTCTCCGTTGATGGGAGAACTGTAGTGGTTGATTCTTCTCTGACTGCTAAGATGATTGCAACCCCAATAAGTGCTCCTGTGATTCCTAGGAGTGTTCCTGCTTGCATTCGCAAGAGGTATTTGGTTGAGTCATTCGGAGAACTACTTTTAGTTATATATCTGGCCACTACAACAGAATGTAGGCATCTTTCAGAACTTGGTGTTACATTCGAGATTTTTAAGTTGAATGCAGCTGAGAAGCAATGGGTCGAGATGGCAACTTTGGATGATCGAATATTGTTTGTGGGTGAAGACAGCTGCTTCTCTGTGCTTGCTCGAGACTTTCCTGGTTGCAAAGGGAACTGCATTTATTTCTATGATCCTTGCTCACGTAGATGTAAGTATCGTTCGCAACCACGAATATTCAGTAACATTGGAGTGTTCGACATTGATGGCGGTGGCAGTAATCGTTCACCTCGGGTGTATTTTCTTGATGATGGCGATGACAGTGCAAATATCTTTTGCCTACCCCAAGATTTGGCCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

398

Amino Acids

44.49

Weight (kDa)

8.54

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	18 - 50	1.3e-06	F-box-like
Beta-prop_KIB1-4	PF03478	97 - 364	3.3e-39	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	1 cut(s)	1183
AciI	CCGC	3 cut(s)	94, 148, 1101
AclWI	GGATC	2 cut(s)	117, 1019
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	3 cut(s)	295, 508, 582
AfaI	GTAC	3 cut(s)	195, 225, 554
AfiI	CCNNNNNNNGG	3 cut(s)	374, 678, 1183
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	9 cut(s)	71, 120, 294, 300, 430, 508, 542, 605, 892
AjnI	CCWGG	1 cut(s)	991
AluBI	AGCT	3 cut(s)	335, 899, 963
AluI	AGCT	3 cut(s)	335, 899, 963
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	673, 978
AlwI	GGATC	2 cut(s)	117, 1019
Ama87I	CYCGRG	3 cut(s)	248, 981, 1122
AoxI	GGCC	2 cut(s)	828, 1185
ApeKI	GCWGC	2 cut(s)	896, 963
ApoI	RAATTY	3 cut(s)	295, 508, 582
AspA2I	CCTAGG	1 cut(s)	752
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	4 cut(s)	341, 590, 965, 1110
AvaI	CYCGRG	3 cut(s)	248, 981, 1122
AvrII	CCTAGG	1 cut(s)	752
BalI	TGGCCA	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	2 cut(s)	908, 950
BccI	CCATC	6 cut(s)	194, 569, 671, 913, 1091, 1136
BcgI	CGANNNNNNTGC	2 cut(s)	1136, 1170
BciT130I	CCWGG	1 cut(s)	993
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	673, 978
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	687
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	3 cut(s)	95, 897, 964
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	3 cut(s)	96, 898, 965
Bme1390I	CCNGG	2 cut(s)	398, 993
BmeT110I	CYCGRG	3 cut(s)	248, 981, 1122
BmiI	GGNNCC	2 cut(s)	276, 379
BmrFI	CCNGG	2 cut(s)	398, 993
BmsI	GCATC	1 cut(s)	859
BpiI	GAAGAC	1 cut(s)	963
BpuMI	CCSGG	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	1037
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	4 cut(s)	247, 752, 1121, 1188
BsaWI	WCCGGW	2 cut(s)	64, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 678, 1183
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	84, 914
BseBI	CCWGG	1 cut(s)	993
BseDI	CCNNGG	4 cut(s)	247, 752, 1121, 1188
BseGI	GGATG	3 cut(s)	258, 364, 937
BseLI	CCNNNNNNNGG	3 cut(s)	374, 678, 1183
BseMI	GCAATG	2 cut(s)	84, 914
BseMII	CTCAG	2 cut(s)	444, 891
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	3 cut(s)	153, 234, 607
BseXI	GCAGC	2 cut(s)	908, 950
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	830, 1187
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	742
BsiHKCI	CYCGRG	3 cut(s)	248, 981, 1122
BsiSI	CCGG	3 cut(s)	65, 398, 491
BslI	CCNNNNNNNGG	3 cut(s)	374, 678, 1183
BsmAI	GTCTC	2 cut(s)	673, 978
BsmI	GAATGC	2 cut(s)	771, 898
BsnI	GGCC	2 cut(s)	830, 1187
Bso31I	GGTCTC	1 cut(s)	673
BsoBI	CYCGRG	3 cut(s)	248, 981, 1122
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	5 cut(s)	58, 122, 621, 934, 1024
BspACI	CCGC	3 cut(s)	94, 148, 1101
BspANI	GGCC	2 cut(s)	830, 1187
BspCNI	CTCAG	2 cut(s)	445, 892
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	276, 379
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	117, 1019
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	673
BsrDI	GCAATG	2 cut(s)	84, 914
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	4 cut(s)	247, 752, 1121, 1188
BssMI	GATC	5 cut(s)	58, 122, 621, 934, 1024
BssT1I	CCWWGG	2 cut(s)	752, 1188
Bst2UI	CCWGG	1 cut(s)	993
Bst4CI	ACNGT	3 cut(s)	172, 688, 1154
BstBAI	YACGTR	1 cut(s)	1037
BstC8I	GCNNGC	2 cut(s)	769, 978
BstDEI	CTNAG	3 cut(s)	453, 714, 900
BstF5I	GGATG	3 cut(s)	258, 364, 937
BstKTI	GATC	5 cut(s)	61, 125, 624, 937, 1027
BstMAI	GTCTC	2 cut(s)	673, 978
BstMBI	GATC	5 cut(s)	58, 122, 621, 934, 1024
BstNI	CCWGG	1 cut(s)	993
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	396, 991
BstSFI	CTRYAG	1 cut(s)	687
BstV1I	GCAGC	2 cut(s)	908, 950
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	830, 1187
BtgZI	GCGATG	1 cut(s)	1161
BtsCI	GGATG	3 cut(s)	258, 364, 937
BtsI	GCAGTG	2 cut(s)	504, 556
BtsIMutI	CAGTG	5 cut(s)	168, 338, 504, 556, 1159
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	769, 978
CciI	TCATGA	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	194, 224, 553
CviAII	CATG	6 cut(s)	27, 144, 269, 358, 647, 1194
CviJI	RGCY	7 cut(s)	97, 335, 404, 830, 899, 963, 1187
CviKI_1	RGCY	7 cut(s)	97, 335, 404, 830, 899, 963, 1187
CviQI	GTAC	3 cut(s)	194, 224, 553
DdeI	CTNAG	3 cut(s)	453, 714, 900
DpnI	GATC	5 cut(s)	60, 124, 623, 936, 1026
DpnII	GATC	5 cut(s)	58, 122, 621, 934, 1024
EaeI	YGGCCR	1 cut(s)	828
Eco130I	CCWWGG	2 cut(s)	752, 1188
Eco31I	GGTCTC	1 cut(s)	673
Eco88I	CYCGRG	3 cut(s)	248, 981, 1122
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	991
EcoT14I	CCWWGG	2 cut(s)	752, 1188
ErhI	CCWWGG	2 cut(s)	752, 1188
FaeI	CATG	6 cut(s)	30, 147, 272, 361, 650, 1197
FatI	CATG	6 cut(s)	26, 143, 268, 357, 646, 1193
Fnu4HI	GCNGC	3 cut(s)	95, 897, 964
FokI	GGATG	3 cut(s)	265, 351, 944
Fsp4HI	GCNGC	3 cut(s)	95, 897, 964
FspBI	CTAG	1 cut(s)	753
GluI	GCNGC	3 cut(s)	95, 897, 964
HaeIII	GGCC	2 cut(s)	830, 1187
HapII	CCGG	3 cut(s)	65, 398, 491
Hin1II	CATG	6 cut(s)	30, 147, 272, 361, 650, 1197
HinfI	GANTC	3 cut(s)	698, 748, 794
HpaII	CCGG	3 cut(s)	65, 398, 491
HphI	GGTGA	4 cut(s)	341, 590, 965, 1110
Hpy166II	GTNNAC	2 cut(s)	175, 1118
Hpy188I	TCNGA	7 cut(s)	22, 39, 454, 514, 708, 803, 859
Hpy8I	GTNNAC	2 cut(s)	175, 1118
HpyAV	CCTTC	2 cut(s)	320, 536
HpyCH4III	ACNGT	3 cut(s)	172, 688, 1154
HpyCH4IV	ACGT	1 cut(s)	1036
HpyF3I	CTNAG	3 cut(s)	453, 714, 900
HpySE526I	ACGT	1 cut(s)	1036
Hsp92II	CATG	6 cut(s)	30, 147, 272, 361, 650, 1197
Kzo9I	GATC	5 cut(s)	58, 122, 621, 934, 1024
LmnI	GCTCC	2 cut(s)	340, 745
Lsp1109I	GCAGC	2 cut(s)	908, 950
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	1 cut(s)	1036
MaeIII	GTNAC	4 cut(s)	319, 360, 868, 1073
MalI	GATC	5 cut(s)	60, 124, 623, 936, 1026
MboI	GATC	5 cut(s)	58, 122, 621, 934, 1024
MboII	GAAGA	3 cut(s)	53, 693, 968
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	742
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	9 cut(s)	71, 108, 295, 425, 508, 548, 563, 582, 600
MluNI	TGGCCA	1 cut(s)	830
MlyI	GAGTC	1 cut(s)	803
MmeI	TCCRAC	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	2 cut(s)	315, 885
MslI	CAYNNNNRTG	2 cut(s)	1039, 1082
Msp20I	TGGCCA	1 cut(s)	830
MspA1I	CMGCKG	2 cut(s)	899, 963
MspI	CCGG	3 cut(s)	65, 398, 491
MspR9I	CCNGG	2 cut(s)	398, 993
Mva1269I	GAATGC	2 cut(s)	771, 898
MvaI	CCWGG	1 cut(s)	993
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	5 cut(s)	58, 122, 621, 934, 1024
NlaIII	CATG	6 cut(s)	30, 147, 272, 361, 650, 1197
NlaIV	GGNNCC	2 cut(s)	276, 379
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	981
PagI	TCATGA	1 cut(s)	646
PaqCI	CACCTGC	1 cut(s)	295
PciI	ACATGT	1 cut(s)	26
PctI	GAATGC	2 cut(s)	771, 898
PfeI	GAWTC	2 cut(s)	698, 748
PflMI	CCANNNNNTGG	1 cut(s)	1183
PkrI	GCNGC	3 cut(s)	96, 898, 965
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
Ppu21I	YACGTR	1 cut(s)	1037
PscI	ACATGT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	991
PspGI	CCWGG	1 cut(s)	991
PspN4I	GGNNCC	2 cut(s)	276, 379
PsrI	GAACNNNNNNTAC	2 cut(s)	1036, 1068
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	2 cut(s)	899, 963
RsaI	GTAC	3 cut(s)	195, 225, 554
RsaNI	GTAC	3 cut(s)	194, 224, 553
RseI	CAYNNNNRTG	2 cut(s)	1039, 1082
SaqAI	TTAA	2 cut(s)	315, 885
SatI	GCNGC	3 cut(s)	95, 897, 964
Sau3AI	GATC	5 cut(s)	58, 122, 621, 934, 1024
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	2 cut(s)	398, 993
SduI	GDGCHC	1 cut(s)	742
SfaNI	GCATC	1 cut(s)	859
SfcI	CTRYAG	1 cut(s)	687
Sfr274I	CTCGAG	1 cut(s)	981
SlaI	CTCGAG	1 cut(s)	981
SmiMI	CAYNNNNRTG	2 cut(s)	1039, 1082
SmlI	CTYRAG	1 cut(s)	981
SmoI	CTYRAG	1 cut(s)	981
Sse9I	AATT	9 cut(s)	71, 108, 295, 425, 508, 548, 563, 582, 600
SsiI	CCGC	3 cut(s)	94, 148, 1101
SspI	AATATT	2 cut(s)	942, 1068
SspMI	CTAG	1 cut(s)	753
StyD4I	CCNGG	2 cut(s)	396, 991
StyI	CCWWGG	2 cut(s)	752, 1188
TaaI	ACNGT	3 cut(s)	172, 688, 1154
TaiI	ACGT	1 cut(s)	1039
TaqI	TCGA	7 cut(s)	461, 620, 876, 915, 937, 982, 1089
TasI	AATT	9 cut(s)	71, 108, 295, 425, 508, 548, 563, 582, 600
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	698, 748
Tru1I	TTAA	2 cut(s)	315, 885
Tru9I	TTAA	2 cut(s)	315, 885
TscAI	CASTG	5 cut(s)	175, 345, 504, 563, 1159
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	896, 963
Tsp45I	GTSAC	1 cut(s)	319
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	5 cut(s)	175, 345, 504, 563, 1159
Van91I	CCANNNNNTGG	1 cut(s)	1183
XapI	RAATTY	3 cut(s)	295, 508, 582
XceI	RCATGY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	981
XmaJI	CCTAGG	1 cut(s)	752
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.