Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9251179 .. 9252369

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGACAGAAAGACAAAGATCTGATACATGTGGAAATCAGAGAGGGGAATGTTGGAGTGATCTTCCGGTTGAATTATTACAGAGCATTGCAAAGCGGCTTGATACCAAAATTGATGTTTCAAGATCCCGTGCTGTTTGTAAATCATGGCGGTTCTCTATTCGTCCTCTCACTGTGAACTCTCCACCCATCAAAGTACATCTTGGTAATGTTATCAGGAGAGGAGTACGACTTGTGAAAAAAACAACCCTCAGGATGAGGGTAGTCTATCATGTGGCACCTCAACCACCTGCTTCAAATTCAAGGGGTTGGTTGGTCAAGGTCACAGAAGGTGAAGCTCCACTGCACAAAACTCATATCATGTTACATCCTCTCTCTGGAACCCCATTCCCAAAAAACCCGGTAGCTAACCCCTTATTACCAAAGGAATTGAACTTTTATGATTTTCGGGTATCGGAGTTGTCGAGAACTTATCACACTCCTTACACTTTTCCGGTGGCAGTGTCCTTGAATTCTGATTGTCCTGCTCTTATGATGATTGTTGAAGGAAAATTGTACCACTGCAAATGTGTTGATGGTGAAATTCCAAAGTGCAAGGAAATTGAAAGTCTTATCTCCTCGATCAAATATGTAGATGTTATTTGTCATGAGGGGAAGTTCTATGTGGTCTCCGTTGATGGGAGAACTGTAGTGGTTGATTCTTCTCTGACTGCTAAGATGATTGCAACCCCAATAAGTGCTCCTGTGATTCCTAGAAGTGTTCCTGCTTGCATTCGCAAGAGGTATTTGGTTGAGTCATTCGGAGAACTACTTTTAGTTATATGTCTGGCCACTACAACAGAATGTAGGCATCTTTCAGAACTTGGTGTTACATTCGAGATTTTTAAGTTGAATGCAGCTGAGAAGCAATGGGTCGAGATGGCAACTTTGGATGATCGAATATTGTTTGTGGGTGAAGACAGCTGCTTCTCTGTGCTTGCTCGAGACTTTCCTGGTTGCAAAGGGAACTGCATTTATTTCTATGATCCTTGCTCACGTAGATGTAAGTATCGTTCGCAACCGCGAATATTCAGTAACATTGGAGTGTTCGACATTGATGGCGGTGGCAGTAATCGTTCACCTCGGGTGTATTTTCTGGATGATGGCGACAGTGAAAATATCTTTTGCCTACCCCAAGATTTGGCCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

396

Amino Acids

44.51

Weight (kDa)

8.76

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	18 - 51	1.2e-06	F-box-like
Beta-prop_KIB1-4	PF03478	95 - 363	1.3e-39	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccII	CGCG	1 cut(s)	1060
AciI	CCGC	4 cut(s)	94, 148, 1058, 1098
AclWI	GGATC	2 cut(s)	117, 1016
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	3 cut(s)	295, 508, 579
AfaI	GTAC	3 cut(s)	195, 225, 554
AfiI	CCNNNNNNNGG	3 cut(s)	374, 675, 1177
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	9 cut(s)	71, 120, 294, 300, 430, 508, 542, 602, 889
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	4 cut(s)	335, 404, 896, 960
AluI	AGCT	4 cut(s)	335, 404, 896, 960
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	2 cut(s)	670, 975
AlwI	GGATC	2 cut(s)	117, 1016
Ama87I	CYCGRG	2 cut(s)	978, 1119
AoxI	GGCC	2 cut(s)	825, 1179
ApeKI	GCWGC	2 cut(s)	893, 960
ApoI	RAATTY	3 cut(s)	295, 508, 579
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	4 cut(s)	341, 587, 962, 1107
AvaI	CYCGRG	2 cut(s)	978, 1119
AxyI	CCTNAGG	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	827
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	2 cut(s)	905, 947
BccI	CCATC	6 cut(s)	194, 566, 668, 910, 1088, 1133
BciT130I	CCWGG	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	670, 975
BfaI	CTAG	1 cut(s)	750
BfmI	CTRYAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	3 cut(s)	95, 894, 961
BlsI	GCNGC	3 cut(s)	96, 895, 962
Bme1390I	CCNGG	2 cut(s)	398, 990
BmeT110I	CYCGRG	2 cut(s)	978, 1119
BmiI	GGNNCC	2 cut(s)	276, 379
BmrFI	CCNGG	2 cut(s)	398, 990
BmsI	GCATC	1 cut(s)	856
BpiI	GAAGAC	1 cut(s)	960
BpuMI	CCSGG	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	1034
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	2 cut(s)	1118, 1182
BsaWI	WCCGGW	2 cut(s)	64, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 675, 1177
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	84, 911
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	2 cut(s)	1118, 1182
BseGI	GGATG	4 cut(s)	258, 364, 934, 1141
BseLI	CCNNNNNNNGG	3 cut(s)	374, 675, 1177
BseMI	GCAATG	2 cut(s)	84, 911
BseMII	CTCAG	2 cut(s)	262, 888
BseRI	GAGGAG	2 cut(s)	234, 604
BseXI	GCAGC	2 cut(s)	905, 947
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	1060
BshFI	GGCC	2 cut(s)	827, 1181
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	739
BsiHKCI	CYCGRG	2 cut(s)	978, 1119
BsiSI	CCGG	3 cut(s)	65, 398, 491
BslI	CCNNNNNNNGG	3 cut(s)	374, 675, 1177
BsmAI	GTCTC	2 cut(s)	670, 975
BsmI	GAATGC	2 cut(s)	768, 895
BsnI	GGCC	2 cut(s)	827, 1181
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	2 cut(s)	978, 1119
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
BspACI	CCGC	4 cut(s)	94, 148, 1058, 1098
BspANI	GGCC	2 cut(s)	827, 1181
BspCNI	CTCAG	2 cut(s)	261, 889
BspFNI	CGCG	1 cut(s)	1060
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	276, 379
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	117, 1016
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	84, 911
BssECI	CCNNGG	2 cut(s)	1118, 1182
BssMI	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
BssT1I	CCWWGG	1 cut(s)	1182
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	3 cut(s)	172, 685, 1148
BstBAI	YACGTR	1 cut(s)	1034
BstC8I	GCNNGC	2 cut(s)	766, 975
BstDEI	CTNAG	3 cut(s)	248, 711, 897
BstF5I	GGATG	4 cut(s)	258, 364, 934, 1141
BstFNI	CGCG	1 cut(s)	1060
BstKTI	GATC	6 cut(s)	20, 61, 125, 621, 934, 1024
BstMAI	GTCTC	2 cut(s)	670, 975
BstMBI	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	396, 988
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	1060
BstV1I	GCAGC	2 cut(s)	905, 947
BstV2I	GAAGAC	1 cut(s)	960
BstX2I	RGATCY	2 cut(s)	17, 122
BstYI	RGATCY	2 cut(s)	17, 122
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	827, 1181
BtsCI	GGATG	4 cut(s)	258, 364, 934, 1141
BtsI	GCAGTG	3 cut(s)	338, 504, 556
BtsIMutI	CAGTG	5 cut(s)	168, 338, 504, 556, 1153
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	766, 975
CciI	TCATGA	1 cut(s)	643
Csp6I	GTAC	3 cut(s)	194, 224, 553
CviAII	CATG	6 cut(s)	27, 144, 269, 358, 644, 1188
CviJI	RGCY	7 cut(s)	97, 335, 404, 827, 896, 960, 1181
CviKI_1	RGCY	7 cut(s)	97, 335, 404, 827, 896, 960, 1181
CviQI	GTAC	3 cut(s)	194, 224, 553
DdeI	CTNAG	3 cut(s)	248, 711, 897
DpnI	GATC	6 cut(s)	19, 60, 124, 620, 933, 1023
DpnII	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
EaeI	YGGCCR	1 cut(s)	825
Eco130I	CCWWGG	1 cut(s)	1182
Eco31I	GGTCTC	1 cut(s)	670
Eco81I	CCTNAGG	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	978, 1119
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	1182
ErhI	CCWWGG	1 cut(s)	1182
FaeI	CATG	6 cut(s)	30, 147, 272, 361, 647, 1191
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	6 cut(s)	26, 143, 268, 357, 643, 1187
Fnu4HI	GCNGC	3 cut(s)	95, 894, 961
FokI	GGATG	4 cut(s)	265, 351, 941, 1148
Fsp4HI	GCNGC	3 cut(s)	95, 894, 961
FspBI	CTAG	1 cut(s)	750
GluI	GCNGC	3 cut(s)	95, 894, 961
HaeIII	GGCC	2 cut(s)	827, 1181
HapII	CCGG	3 cut(s)	65, 398, 491
Hin1II	CATG	6 cut(s)	30, 147, 272, 361, 647, 1191
HinfI	GANTC	3 cut(s)	695, 745, 791
HpaII	CCGG	3 cut(s)	65, 398, 491
HphI	GGTGA	4 cut(s)	341, 587, 962, 1107
Hpy166II	GTNNAC	2 cut(s)	175, 1115
Hpy188I	TCNGA	7 cut(s)	22, 39, 454, 514, 705, 800, 856
Hpy8I	GTNNAC	2 cut(s)	175, 1115
HpyAV	CCTTC	2 cut(s)	320, 536
HpyCH4III	ACNGT	3 cut(s)	172, 685, 1148
HpyCH4IV	ACGT	1 cut(s)	1033
HpyCH4V	TGCA	9 cut(s)	89, 343, 561, 591, 722, 768, 893, 996, 1008
HpyF3I	CTNAG	3 cut(s)	248, 711, 897
HpySE526I	ACGT	1 cut(s)	1033
Hsp92II	CATG	6 cut(s)	30, 147, 272, 361, 647, 1191
Kzo9I	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
LmnI	GCTCC	2 cut(s)	340, 742
Lsp1109I	GCAGC	2 cut(s)	905, 947
LweI	GCATC	1 cut(s)	856
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	1 cut(s)	1033
MaeIII	GTNAC	4 cut(s)	319, 360, 865, 1070
MalI	GATC	6 cut(s)	19, 60, 124, 620, 933, 1023
MboI	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
MboII	GAAGA	3 cut(s)	53, 690, 965
MflI	RGATCY	2 cut(s)	17, 122
MhlI	GDGCHC	1 cut(s)	739
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	8 cut(s)	71, 108, 295, 425, 508, 548, 579, 597
MluNI	TGGCCA	1 cut(s)	827
MlyI	GAGTC	1 cut(s)	800
MmeI	TCCRAC	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	827
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	1 cut(s)	882
MslI	CAYNNNNRTG	2 cut(s)	1036, 1079
Msp20I	TGGCCA	1 cut(s)	827
MspA1I	CMGCKG	2 cut(s)	896, 960
MspI	CCGG	3 cut(s)	65, 398, 491
MspR9I	CCNGG	2 cut(s)	398, 990
Mva1269I	GAATGC	2 cut(s)	768, 895
MvaI	CCWGG	1 cut(s)	990
MvnI	CGCG	1 cut(s)	1060
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
NlaIII	CATG	6 cut(s)	30, 147, 272, 361, 647, 1191
NlaIV	GGNNCC	2 cut(s)	276, 379
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	978
PagI	TCATGA	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	295
PciI	ACATGT	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PctI	GAATGC	2 cut(s)	768, 895
PfeI	GAWTC	2 cut(s)	695, 745
PflMI	CCANNNNNTGG	1 cut(s)	1177
PkrI	GCNGC	3 cut(s)	96, 895, 962
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
Ppu21I	YACGTR	1 cut(s)	1034
PscI	ACATGT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	988
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	2 cut(s)	276, 379
PsrI	GAACNNNNNNTAC	2 cut(s)	1033, 1065
PsuI	RGATCY	2 cut(s)	17, 122
PvuII	CAGCTG	2 cut(s)	896, 960
RsaI	GTAC	3 cut(s)	195, 225, 554
RsaNI	GTAC	3 cut(s)	194, 224, 553
RseI	CAYNNNNRTG	2 cut(s)	1036, 1079
SaqAI	TTAA	1 cut(s)	882
SatI	GCNGC	3 cut(s)	95, 894, 961
Sau3AI	GATC	6 cut(s)	17, 58, 122, 618, 931, 1021
SchI	GAGTC	1 cut(s)	800
ScrFI	CCNGG	2 cut(s)	398, 990
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	1 cut(s)	856
SfcI	CTRYAG	1 cut(s)	684
Sfr274I	CTCGAG	1 cut(s)	978
SlaI	CTCGAG	1 cut(s)	978
SmiMI	CAYNNNNRTG	2 cut(s)	1036, 1079
SmlI	CTYRAG	1 cut(s)	978
SmoI	CTYRAG	1 cut(s)	978
Sse9I	AATT	8 cut(s)	71, 108, 295, 425, 508, 548, 579, 597
SsiI	CCGC	4 cut(s)	94, 148, 1058, 1098
SspI	AATATT	2 cut(s)	939, 1065
SspMI	CTAG	1 cut(s)	750
StyD4I	CCNGG	2 cut(s)	396, 988
StyI	CCWWGG	1 cut(s)	1182
TaaI	ACNGT	3 cut(s)	172, 685, 1148
TaiI	ACGT	1 cut(s)	1036
TaqI	TCGA	7 cut(s)	461, 617, 873, 912, 934, 979, 1086
TasI	AATT	8 cut(s)	71, 108, 295, 425, 508, 548, 579, 597
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	695, 745
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	5 cut(s)	175, 345, 504, 563, 1153
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	893, 960
Tsp45I	GTSAC	1 cut(s)	319
TspGWI	ACGGA	1 cut(s)	658
TspRI	CASTG	5 cut(s)	175, 345, 504, 563, 1153
Van91I	CCANNNNNTGG	1 cut(s)	1177
XapI	RAATTY	3 cut(s)	295, 508, 579
XceI	RCATGY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	978
XspI	CTAG	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.