Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

9292638 .. 9293787

Gene Structure 1150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGGTCTTCTATTCCTCCCATCAAGCCGCTCAATTATCCTACAGATTTCATAGGACGCTTAGAGCTTTCAGCACCATCGAGACTGTATTCTATCATGTTGTACCTCCGGCCAATGATGACAACGAAAGGAAAAGGGGTTGGTTGATTAGATTAAGCAGAAACCCAAATGGAAACCCAAAATCAAAGTTGATTCCGGCATTACTTCCTCCATTATCTCGGTTCATCCTCTACTTGCATCAAGGCTCTTTCATGGTGCACCGGTCAGACCGGTCCTTATCCTCATTCCGGGCAAAGGGAATAAGCTTCTTGGACTTTGGCGTATCTGAATACTCTTACGGTGTCATCAGAACAAGATTCTTAATAAGATGGTCATCTGCTATATATAAAGATGAACCTTTTGATGATGTGATTTTCTATCAAGGAAAGTTCTATGCTGTCTCCAAGTATGGAAGAGCTATAGTGCTGCATTCTTCCACGACGAATTGGGCAGATATTGCGTCTCCAGTATTCCCTTTGGGTTTCGACAAGACGAAGAAGAAGAATTATTGGGTGCAATCATTGGGGGAGCTGATTGTAGTTGAGAGAGATGTGTGTGCATTTGTGGGAAAAGGTGGCTGTGTAGACTATATGCTTAAGACTGAAATTAAGTTCAGGGTTTATAAGTTGAATGAAATTAGGAAGCAATGGGTTGAGATGGAAGCTTCGGATTTGAATGATCGAATCTTGTTTGTGGGGGAGGACTGCTGCTTCTCAGTTTCTACTCGAGGCTTCCCTGGATGCCAAGGAAGTTGCATTTATTTCTGTTATGAGCAGTATGATAAATGGGATGGTGGTGATAACTGTAGTGGAATTGGAATGTTCAACTTGGATGATGGAAGGGGGCTGCGCTTAGAATGCCACCCACCCTGCCCAGTGCTAATATCTTTATGCCACCCCCCACTTGACCTAAGAGCAAGTGCACCCGTAGTCAAGAAAAGGCAAAGTCGAGAAGTCAAGAATTCGACCAGTCAAGATACTATTCACTGCCACTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

346

Amino Acids

39.64

Weight (kDa)

8.98

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	122 - 289	1.3e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccBSI	CCGCTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	2 cut(s)	5, 30
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	1000
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	288, 295
AflII	CTTAAG	1 cut(s)	635
AgeI	ACCGGT	2 cut(s)	261, 270
AgsI	TTSAA	3 cut(s)	670, 715, 865
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	5 cut(s)	68, 306, 458, 571, 704
AluI	AGCT	5 cut(s)	68, 306, 458, 571, 704
Alw21I	GWGCWC	2 cut(s)	261, 964
Alw26I	GTCTC	3 cut(s)	77, 445, 507
Alw44I	GTGCAC	2 cut(s)	257, 960
Ama87I	CYCGRG	1 cut(s)	765
AoxI	GGCC	1 cut(s)	111
ApaLI	GTGCAC	2 cut(s)	257, 960
ApeKI	GCWGC	3 cut(s)	466, 747, 886
ApoI	RAATTY	1 cut(s)	1000
AsiGI	ACCGGT	2 cut(s)	261, 270
AspLEI	GCGC	1 cut(s)	891
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	848
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	261, 964
Bbv12I	GWGCWC	2 cut(s)	261, 964
BbvI	GCAGC	3 cut(s)	453, 734, 873
BccI	CCATC	6 cut(s)	30, 86, 363, 691, 824, 869
BciT130I	CCWGG	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	3 cut(s)	77, 445, 507
BfmI	CTRYAG	3 cut(s)	43, 459, 844
BfrI	CTTAAG	1 cut(s)	635
BisI	GCNGC	4 cut(s)	30, 467, 748, 887
BlsI	GCNGC	4 cut(s)	31, 468, 749, 888
Bme1390I	CCNGG	2 cut(s)	290, 777
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	290, 777
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	2 cut(s)	247, 770
BmuI	ACTGGG	1 cut(s)	908
BpmI	CTGGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	775, 784
BsaWI	WCCGGW	2 cut(s)	261, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 295
Bse118I	RCCGGY	2 cut(s)	261, 270
Bse1I	ACTGG	4 cut(s)	506, 914, 1008, 1037
Bse3DI	GCAATG	1 cut(s)	692
Bse8I	GATNNNNATC	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	775, 784
BseGI	GGATG	4 cut(s)	225, 785, 835, 877
BseJI	GATNNNNATC	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	288, 295
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	4 cut(s)	506, 914, 1008, 1037
BseSI	GKGCMC	2 cut(s)	261, 964
BseXI	GCAGC	3 cut(s)	453, 734, 873
BshFI	GGCC	1 cut(s)	113
BshTI	ACCGGT	2 cut(s)	261, 270
BsiHKAI	GWGCWC	2 cut(s)	261, 964
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	5 cut(s)	110, 197, 262, 271, 289
BslI	CCNNNNNNNGG	2 cut(s)	288, 295
BsmAI	GTCTC	3 cut(s)	77, 445, 507
BsmBI	CGTCTC	1 cut(s)	507
BsmI	GAATGC	2 cut(s)	469, 902
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	765
Bsp1286I	GDGCHC	2 cut(s)	261, 964
Bsp143I	GATC	1 cut(s)	718
BspACI	CCGC	2 cut(s)	5, 30
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	767
BspQI	GCTCTTC	1 cut(s)	448
BspTI	CTTAAG	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	692
BsrFI	RCCGGY	2 cut(s)	261, 270
BsrI	ACTGG	4 cut(s)	506, 914, 1008, 1037
BssAI	RCCGGY	2 cut(s)	261, 270
BssECI	CCNNGG	2 cut(s)	775, 784
BssMI	GATC	1 cut(s)	718
BssT1I	CCWWGG	1 cut(s)	784
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	3 cut(s)	88, 341, 845
Bst6I	CTCTTC	1 cut(s)	448
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstDEI	CTNAG	4 cut(s)	62, 754, 892, 950
BstF5I	GGATG	4 cut(s)	225, 785, 835, 877
BstHHI	GCGC	1 cut(s)	891
BstKTI	GATC	1 cut(s)	721
BstMAI	GTCTC	3 cut(s)	77, 445, 507
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 897
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	2 cut(s)	288, 775
BstSFI	CTRYAG	3 cut(s)	43, 459, 844
BstSLI	GKGCMC	2 cut(s)	261, 964
BstV1I	GCAGC	3 cut(s)	453, 734, 873
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	4 cut(s)	225, 785, 835, 877
BtsI	GCAGTG	1 cut(s)	1024
BtsIMutI	CAGTG	3 cut(s)	921, 1024, 1030
CfoI	GCGC	1 cut(s)	891
Cfr10I	RCCGGY	2 cut(s)	261, 270
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	2 cut(s)	67, 489
Csp6I	GTAC	1 cut(s)	104
CspAI	ACCGGT	2 cut(s)	261, 270
CviAII	CATG	2 cut(s)	98, 253
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	4 cut(s)	62, 754, 892, 950
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	765
EcoRI	GAATTC	1 cut(s)	1000
EcoRII	CCWGG	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	784
ErhI	CCWWGG	1 cut(s)	784
Esp3I	CGTCTC	1 cut(s)	507
FaeI	CATG	2 cut(s)	101, 256
FatI	CATG	2 cut(s)	97, 252
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	30, 467, 748, 887
FokI	GGATG	4 cut(s)	212, 792, 842, 884
Fsp4HI	GCNGC	4 cut(s)	30, 467, 748, 887
GlaI	GCGC	1 cut(s)	890
GluI	GCNGC	4 cut(s)	30, 467, 748, 887
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	5 cut(s)	110, 197, 262, 271, 289
HgaI	GACGC	2 cut(s)	67, 489
HhaI	GCGC	1 cut(s)	891
Hin1II	CATG	2 cut(s)	101, 256
Hin6I	GCGC	1 cut(s)	889
HinP1I	GCGC	1 cut(s)	889
HindIII	AAGCTT	2 cut(s)	304, 702
HinfI	GANTC	3 cut(s)	193, 357, 723
HpaII	CCGG	5 cut(s)	110, 197, 262, 271, 289
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	3 cut(s)	259, 625, 962
Hpy188I	TCNGA	4 cut(s)	268, 328, 350, 709
Hpy188III	TCNNGA	5 cut(s)	82, 973, 989, 997, 1013
Hpy8I	GTNNAC	3 cut(s)	259, 625, 962
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	873
HpyCH4III	ACNGT	3 cut(s)	88, 341, 845
HpyCH4V	TGCA	7 cut(s)	238, 259, 469, 556, 599, 795, 962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 897
HpyF3I	CTNAG	4 cut(s)	62, 754, 892, 950
Hsp92II	CATG	2 cut(s)	101, 256
HspAI	GCGC	1 cut(s)	889
Kzo9I	GATC	1 cut(s)	718
LguI	GCTCTTC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	3 cut(s)	453, 734, 873
LweI	GCATC	2 cut(s)	247, 770
MalI	GATC	1 cut(s)	720
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	1 cut(s)	718
MboII	GAAGA	5 cut(s)	465, 465, 547, 550, 553
MhlI	GDGCHC	2 cut(s)	261, 964
MluCI	AATT	7 cut(s)	35, 484, 544, 645, 675, 852, 1000
MnlI	CCTC	7 cut(s)	28, 117, 219, 239, 292, 733, 761
MseI	TTAA	4 cut(s)	155, 362, 636, 648
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	5 cut(s)	110, 197, 262, 271, 289
MspR9I	CCNGG	2 cut(s)	290, 777
Mva1269I	GAATGC	2 cut(s)	469, 902
MvaI	CCWGG	1 cut(s)	777
MwoI	GCNNNNNNNGC	2 cut(s)	497, 897
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	718
NlaIII	CATG	2 cut(s)	101, 256
PaeR7I	CTCGAG	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	448
PctI	GAATGC	2 cut(s)	469, 902
PfeI	GAWTC	3 cut(s)	193, 357, 723
PinAI	ACCGGT	2 cut(s)	261, 270
PkrI	GCNGC	4 cut(s)	31, 468, 749, 888
PsiI	TTATAA	1 cut(s)	663
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspPI	GGNCC	1 cut(s)	273
PspXI	VCTCGAGB	1 cut(s)	765
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	448
SaqAI	TTAA	4 cut(s)	155, 362, 636, 648
SatI	GCNGC	4 cut(s)	30, 467, 748, 887
Sau3AI	GATC	1 cut(s)	718
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	290, 777
SduI	GDGCHC	2 cut(s)	261, 964
SetI	ASST	9 cut(s)	70, 109, 308, 400, 460, 573, 616, 706, 951
SfaNI	GCATC	2 cut(s)	247, 770
SfcI	CTRYAG	3 cut(s)	43, 459, 844
Sfr274I	CTCGAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	765
SmlI	CTYRAG	2 cut(s)	635, 765
SmoI	CTYRAG	2 cut(s)	635, 765
Sse9I	AATT	7 cut(s)	35, 484, 544, 645, 675, 852, 1000
SsiI	CCGC	2 cut(s)	5, 30
StyD4I	CCNGG	2 cut(s)	288, 775
StyI	CCWWGG	1 cut(s)	784
TaaI	ACNGT	3 cut(s)	88, 341, 845
TaqI	TCGA	6 cut(s)	81, 525, 721, 766, 988, 1004
TasI	AATT	7 cut(s)	35, 484, 544, 645, 675, 852, 1000
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	193, 357, 723
Tru1I	TTAA	4 cut(s)	155, 362, 636, 648
Tru9I	TTAA	4 cut(s)	155, 362, 636, 648
TscAI	CASTG	3 cut(s)	921, 1031, 1037
TseI	GCWGC	3 cut(s)	466, 747, 886
TspDTI	ATGAA	5 cut(s)	41, 214, 241, 408, 687
TspRI	CASTG	3 cut(s)	921, 1031, 1037
Vha464I	CTTAAG	1 cut(s)	635
VneI	GTGCAC	2 cut(s)	257, 960
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	1000
XhoI	CTCGAG	1 cut(s)	765
XmiI	GTMKAC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.