Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002880.1

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

18508 .. 19449

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002880.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgagggtagtctatcatgtggcacctcaaccacctgcttcaaattcaaggggttggttggttaaggtcaccgaaggtgaagttccactgcacaaaactcatatcatgttacatcctctctctggaaccccattcccaaaaaacccggtagctaacccattattaccaaaggaattgaacttttatgattttcgggtatctgagttgtcgagaacttatcacactccttacacttttccggtggcagtgtccttgaattctgattgtcctgcacttatgatgattgttgaaggaaaattgtaccactgcaaattaggtgttgatgatgttatttgtcatgaggggaagttctatgtggtctccgttgatgggagaactgtagtggttgattcttctttgactgttaagatgattgcaaccccaataagtgctcctgtgattcctagaagtgttcctgcttgcattcgcaagaggtatttggttgagtcattcggagaactacttttagttatatgtctggccactacaacagaatgtaggcatctttcagaacttggtgttacattcgagatttttaagttgaatgcagctgagaagcaatgggtcgagatggcaactttggatgatcgaatattgtttgtgggtgaagacagctgcttctctgtgcttgctcgagactttcctggttgcaaagggaactgcatttatttctatgatccttgctcacgtagatgtaagtatcgttcgcaacaacgaatattcagtaacattggagtgttcgacattgatgacggtggcagtaatcgttcacctcgggtgtattttcttgatgatggcgacagtgcaaatatcttttgcctaccccaggatttggccttggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

294

Amino Acids

32.9

Weight (kDa)

6.44

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	871
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	43, 256
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	4 cut(s)	122, 369, 865, 871
AgsI	TTSAA	6 cut(s)	42, 48, 178, 256, 290, 583
AjnI	CCWGG	2 cut(s)	682, 864
AluBI	AGCT	3 cut(s)	152, 590, 654
AluI	AGCT	3 cut(s)	152, 590, 654
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	2 cut(s)	364, 669
AlwI	GGATC	1 cut(s)	710
Ama87I	CYCGRG	2 cut(s)	672, 813
AoxI	GGCC	2 cut(s)	519, 873
ApeKI	GCWGC	2 cut(s)	587, 654
ApoI	RAATTY	2 cut(s)	43, 256
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	61, 89, 656, 801
AvaI	CYCGRG	2 cut(s)	672, 813
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	599, 641
BccI	CCATC	3 cut(s)	362, 604, 827
BciT130I	CCWGG	2 cut(s)	684, 866
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	364, 669
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	588, 655
BlsI	GCNGC	2 cut(s)	589, 656
Bme1390I	CCNGG	3 cut(s)	146, 684, 866
BmeT110I	CYCGRG	2 cut(s)	672, 813
BmiI	GGNNCC	2 cut(s)	24, 127
BmrFI	CCNGG	3 cut(s)	146, 684, 866
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	812, 864, 876
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 369, 865, 871
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	684, 866
BseDI	CCNNGG	3 cut(s)	812, 864, 876
BseGI	GGATG	2 cut(s)	112, 628
BseLI	CCNNNNNNNGG	4 cut(s)	122, 369, 865, 871
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	2 cut(s)	192, 582
BseXI	GCAGC	2 cut(s)	599, 641
BsgI	GTGCAG	2 cut(s)	74, 255
BshFI	GGCC	2 cut(s)	521, 875
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	433
BsiHKCI	CYCGRG	2 cut(s)	672, 813
BsiSI	CCGG	2 cut(s)	146, 239
BslI	CCNNNNNNNGG	4 cut(s)	122, 369, 865, 871
BsmAI	GTCTC	2 cut(s)	364, 669
BsmI	GAATGC	2 cut(s)	462, 589
BsnI	GGCC	2 cut(s)	521, 875
Bso31I	GGTCTC	1 cut(s)	364
BsoBI	CYCGRG	2 cut(s)	672, 813
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	625, 715
BspANI	GGCC	2 cut(s)	521, 875
BspCNI	CTCAG	2 cut(s)	193, 583
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	24, 127
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	605
BssECI	CCNNGG	3 cut(s)	812, 864, 876
BssMI	GATC	2 cut(s)	625, 715
BssT1I	CCWWGG	1 cut(s)	876
Bst2UI	CCWGG	2 cut(s)	684, 866
Bst4CI	ACNGT	4 cut(s)	379, 403, 794, 842
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	460, 669
BstDEI	CTNAG	2 cut(s)	201, 591
BstEII	GGTNACC	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	863
BstF5I	GGATG	2 cut(s)	112, 628
BstKTI	GATC	2 cut(s)	628, 718
BstMAI	GTCTC	2 cut(s)	364, 669
BstMBI	GATC	2 cut(s)	625, 715
BstNI	CCWGG	2 cut(s)	684, 866
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	144, 682, 864
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	599, 641
BstV2I	GAAGAC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	521, 875
BtsCI	GGATG	2 cut(s)	112, 628
BtsI	GCAGTG	3 cut(s)	86, 252, 304
BtsIMutI	CAGTG	4 cut(s)	86, 252, 304, 847
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	460, 669
CciI	TCATGA	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	4 cut(s)	17, 106, 338, 882
CviJI	RGCY	5 cut(s)	152, 521, 590, 654, 875
CviKI_1	RGCY	5 cut(s)	152, 521, 590, 654, 875
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	201, 591
DpnI	GATC	2 cut(s)	627, 717
DpnII	GATC	2 cut(s)	625, 715
EaeI	YGGCCR	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	876
Eco31I	GGTCTC	1 cut(s)	364
Eco88I	CYCGRG	2 cut(s)	672, 813
Eco91I	GGTNACC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	863
EcoO65I	GGTNACC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	682, 864
EcoT14I	CCWWGG	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	4 cut(s)	20, 109, 341, 885
FatI	CATG	4 cut(s)	16, 105, 337, 881
Fnu4HI	GCNGC	2 cut(s)	588, 655
FokI	GGATG	2 cut(s)	99, 635
Fsp4HI	GCNGC	2 cut(s)	588, 655
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	2 cut(s)	588, 655
HaeIII	GGCC	2 cut(s)	521, 875
HapII	CCGG	2 cut(s)	146, 239
Hin1II	CATG	4 cut(s)	20, 109, 341, 885
HinfI	GANTC	3 cut(s)	389, 439, 485
HpaII	CCGG	2 cut(s)	146, 239
HphI	GGTGA	4 cut(s)	61, 89, 656, 801
Hpy166II	GTNNAC	1 cut(s)	809
Hpy188I	TCNGA	4 cut(s)	202, 262, 494, 550
Hpy188III	TCNNGA	7 cut(s)	123, 210, 338, 568, 607, 674, 827
Hpy8I	GTNNAC	1 cut(s)	809
HpyAV	CCTTC	2 cut(s)	68, 284
HpyCH4III	ACNGT	4 cut(s)	379, 403, 794, 842
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	9 cut(s)	91, 272, 309, 416, 462, 587, 690, 702, 845
HpyF3I	CTNAG	2 cut(s)	201, 591
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	4 cut(s)	20, 109, 341, 885
Kzo9I	GATC	2 cut(s)	625, 715
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	2 cut(s)	599, 641
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	4 cut(s)	67, 108, 559, 764
MalI	GATC	2 cut(s)	627, 717
MboI	GATC	2 cut(s)	625, 715
MboII	GAAGA	2 cut(s)	384, 659
MhlI	GDGCHC	1 cut(s)	433
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	5 cut(s)	43, 173, 256, 296, 311
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	5 cut(s)	36, 126, 334, 465, 822
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	3 cut(s)	63, 405, 576
MslI	CAYNNNNRTG	2 cut(s)	730, 773
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	590, 654
MspI	CCGG	2 cut(s)	146, 239
MspR9I	CCNGG	3 cut(s)	146, 684, 866
Mva1269I	GAATGC	2 cut(s)	462, 589
MvaI	CCWGG	2 cut(s)	684, 866
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	625, 715
NlaIII	CATG	4 cut(s)	20, 109, 341, 885
NlaIV	GGNNCC	2 cut(s)	24, 127
NmuCI	GTSAC	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	672
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	43
PctI	GAATGC	2 cut(s)	462, 589
PfeI	GAWTC	2 cut(s)	389, 439
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	2 cut(s)	589, 656
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	728
Psp6I	CCWGG	2 cut(s)	682, 864
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	2 cut(s)	682, 864
PspN4I	GGNNCC	2 cut(s)	24, 127
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PvuII	CAGCTG	2 cut(s)	590, 654
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	2 cut(s)	730, 773
SaqAI	TTAA	3 cut(s)	63, 405, 576
SatI	GCNGC	2 cut(s)	588, 655
Sau3AI	GATC	2 cut(s)	625, 715
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	146, 684, 866
SduI	GDGCHC	1 cut(s)	433
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	672
SlaI	CTCGAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	2 cut(s)	730, 773
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
Sse9I	AATT	5 cut(s)	43, 173, 256, 296, 311
SspI	AATATT	2 cut(s)	633, 759
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	144, 682, 864
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	4 cut(s)	379, 403, 794, 842
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	6 cut(s)	209, 567, 606, 628, 673, 780
TasI	AATT	5 cut(s)	43, 173, 256, 296, 311
TfiI	GAWTC	2 cut(s)	389, 439
Tru1I	TTAA	3 cut(s)	63, 405, 576
Tru9I	TTAA	3 cut(s)	63, 405, 576
TscAI	CASTG	4 cut(s)	93, 252, 311, 847
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	587, 654
Tsp45I	GTSAC	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	4 cut(s)	93, 252, 311, 847
Van91I	CCANNNNNTGG	1 cut(s)	871
XagI	CCTNNNNNAGG	1 cut(s)	863
XapI	RAATTY	2 cut(s)	43, 256
XhoI	CTCGAG	1 cut(s)	672
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.