Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

10626047 .. 10628982

Gene Structure 2936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGCATAAACAAAAGCAATGCATGTTCGGGGTCAGCTCAAGCAGTGAAGAAAGCCTACAGCGATGGCGGTGAGACATATCCCGGACGAATTGATAGAGATCATCCTAAGCACCTTGACCTTAAGAACGAAATCCATGTCAAGCAATTTCATGCCGTTTGTCAACCTTGGCGGTGTTCTATTCCTCCCATCAAGCCGCTCAATTATCCTACAGATTTCATAGGACGCTTAGAGCTCTCAGCACCATCGAGACTGTATTCTATCATGTTCTACCTCCGGCCAATGATGCCAATGAAAGGAAAAGGGGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

104

Amino Acids

11.66

Weight (kDa)

9.55

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	199
AciI	CCGC	3 cut(s)	69, 172, 197
AcoI	YGGCCR	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflII	CTTAAG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	38, 235
AluI	AGCT	2 cut(s)	38, 235
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	68, 244
AoxI	GGCC	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	3 cut(s)	59, 197, 253
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	68, 244
BfmI	CTRYAG	2 cut(s)	58, 210
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	84, 277
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	68, 244
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	3 cut(s)	69, 172, 197
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	108, 229, 238
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	68, 244
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	2 cut(s)	58, 210
BsuRI	GGCC	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
CseI	GACGC	1 cut(s)	234
CviAII	CATG	4 cut(s)	24, 137, 152, 265
CviJI	RGCY	5 cut(s)	38, 56, 196, 235, 280
CviKI_1	RGCY	5 cut(s)	38, 56, 196, 235, 280
DdeI	CTNAG	3 cut(s)	108, 229, 238
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	4 cut(s)	27, 140, 155, 268
FaiI	YATR	7 cut(s)	8, 25, 79, 138, 153, 221, 266
FatI	CATG	4 cut(s)	23, 136, 151, 264
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	2 cut(s)	84, 277
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	27, 140, 155, 268
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	84, 277
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	3 cut(s)	108, 229, 238
Hsp92II	CATG	4 cut(s)	27, 140, 155, 268
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	97, 290
LweI	GCATC	1 cut(s)	276
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	90, 146, 202
MnlI	CCTC	2 cut(s)	195, 284
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	2 cut(s)	84, 277
MspR9I	CCNGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	27, 140, 155, 268
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	40, 117, 123, 169, 237, 276
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	2 cut(s)	58, 210
SmlI	CTYRAG	2 cut(s)	39, 122
SmoI	CTYRAG	2 cut(s)	39, 122
Sse9I	AATT	3 cut(s)	90, 146, 202
SsiI	CCGC	3 cut(s)	69, 172, 197
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	90, 146, 202
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	3 cut(s)	140, 208, 308
TspRI	CASTG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	122
XceI	RCATGY	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.