Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9966209 .. 9967609

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCGGATAGAGATCTCCCAGACGAGCTGATAGAGATGATCAGAAAGCACCTTGACCTTGGAACCAACATCTATGTTACTCAGTTCCGTGCCGTCTGTCAATATTGGCGATCTTCTATCCCTTCACTCAGTCCACGCGAGCCACCACCTCAAGACCCTCTATTACCCTCTAGATTTTACATAAGGTCTGGATCTTTTACCACCATCAAGCGTAGCGTAGTCTATCATATTGCACCTTCTACTCATGACGATGATGCTAATGAAAGGAAACGGGGCTGGTTGATTCGATTGGATGCAGAACAAAAGTTACGTCCTCCATTATCGTGGAGTAATGGAGCTTTGGAAAAGCCAAGGGTAATAAACACAGTAGACTTTGGCGTACTTGAAGCGGCAAAACCTTATCTCTTGGCAAGTAATTACGACAAGAATTACCACAAGCTGGCTGTTTCCTTAAATCTCGACGTCTTCCCTGCAGTCATGCTGGTTAGGGATGGAGTTTTATACCTCGGAAAGTGGTCTGGTGGTGGTGTTGAAGTTAAAGAATATTCCGTCCAACTCTCCCCGTCGGATCCTGATGATGATGATGATCCCTCATGCAGCAAAACAATTAAAGCTAATGATTATGATGATGTTATTTTTTATCAAGGAAAGTTTTGTGCAGTCTCTCAGTCTGGGAAACTTGCAGCGATGGATTCTTCCTTTAAGTGGAAAGTGATTGCGTTTCCAGTATCTACTTCAATGTGGTGGAAGAAGGAGAAGAAGAAGAACTTGGTCGAATCTCTCGGGGAGCTGCTTTTAGTCGAAAGACATGGTTCTACTTTTGTTGCAAAACATTGTTCTGTGGAAGATATGCTCAAGAATGAAGTCAAGTTCAAGGTTTACAAGTTGGATGGAGTTCGGAAGCAATGGGTTGAGATGAAGGGTTCGGATTTGGATGATCGAATATTGTTTGTGGGGGAAGACTGCTGCTTTTCAGTTTCTACTCGAGACTTCCCGGGATGCCAAGGGAATTGCATATATTTTTCTTATGAAGTTTGGTGTGGTAAGAATGTCATCTCTAGTAGAATTGGAGTGTTCCACTTGGATGTTGGGAGGGTCACCACTAGAAGCCAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

372

Amino Acids

42.27

Weight (kDa)

7.52

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	189 - 359	1.4e-31	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	5, 389
AclWI	GGATC	4 cut(s)	199, 563, 576, 581
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	439, 705
AgsI	TTSAA	4 cut(s)	386, 533, 738, 874
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	5 cut(s)	28, 338, 439, 614, 790
AluI	AGCT	5 cut(s)	28, 338, 439, 614, 790
Alw26I	GTCTC	2 cut(s)	667, 981
AlwI	GGATC	4 cut(s)	199, 563, 576, 581
Ama87I	CYCGRG	3 cut(s)	782, 984, 994
ApeKI	GCWGC	4 cut(s)	597, 683, 790, 966
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AsuC2I	CCSGG	2 cut(s)	995, 996
AsuHPI	GGTGA	1 cut(s)	1090
AvaI	CYCGRG	3 cut(s)	782, 984, 994
BamHI	GGATCC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	457, 966
BbvI	GCAGC	4 cut(s)	609, 695, 777, 953
BccI	CCATC	4 cut(s)	212, 485, 682, 884
BceAI	ACGGC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	2 cut(s)	995, 996
BcoDI	GTCTC	2 cut(s)	667, 981
BfaI	CTAG	3 cut(s)	171, 1059, 1104
BfmI	CTRYAG	1 cut(s)	471
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	5 cut(s)	390, 598, 684, 791, 967
BlsI	GCNGC	5 cut(s)	391, 599, 685, 792, 968
Bme1390I	CCNGG	2 cut(s)	995, 996
BmeT110I	CYCGRG	3 cut(s)	782, 984, 994
BmiI	GGNNCC	2 cut(s)	64, 570
BmrFI	CCNGG	2 cut(s)	995, 996
BmsI	GCATC	3 cut(s)	244, 283, 989
BpiI	GAAGAC	2 cut(s)	457, 966
BpuEI	CTTGAG	2 cut(s)	135, 839
BpuMI	CCSGG	2 cut(s)	995, 996
BsaBI	GATNNNNATC	2 cut(s)	12, 585
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	5 cut(s)	58, 350, 505, 994, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 705
Bse1I	ACTGG	2 cut(s)	725, 1111
Bse3DI	GCAATG	1 cut(s)	911
Bse8I	GATNNNNATC	2 cut(s)	12, 585
BseDI	CCNNGG	5 cut(s)	58, 350, 505, 994, 1003
BseGI	GGATG	6 cut(s)	298, 496, 895, 940, 1004, 1090
BseJI	GATNNNNATC	2 cut(s)	12, 585
BseLI	CCNNNNNNNGG	2 cut(s)	439, 705
BseMI	GCAATG	1 cut(s)	911
BseMII	CTCAG	3 cut(s)	95, 142, 680
BseNI	ACTGG	2 cut(s)	725, 1111
BseXI	GCAGC	4 cut(s)	609, 695, 777, 953
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	138
BsiHKCI	CYCGRG	3 cut(s)	782, 984, 994
BsiSI	CCGG	1 cut(s)	995
BslI	CCNNNNNNNGG	2 cut(s)	439, 705
BsmAI	GTCTC	2 cut(s)	667, 981
BsoBI	CYCGRG	3 cut(s)	782, 984, 994
Bsp143I	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
BspACI	CCGC	2 cut(s)	5, 389
BspCNI	CTCAG	3 cut(s)	94, 141, 679
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	64, 570
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	4 cut(s)	199, 563, 576, 581
BsrDI	GCAATG	1 cut(s)	911
BsrI	ACTGG	2 cut(s)	725, 1111
BssECI	CCNNGG	5 cut(s)	58, 350, 505, 994, 1003
BssMI	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	3 cut(s)	58, 350, 1003
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	140, 441
BstDEI	CTNAG	3 cut(s)	81, 128, 666
BstEII	GGTNACC	1 cut(s)	1096
BstF5I	GGATG	6 cut(s)	298, 496, 895, 940, 1004, 1090
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	7 cut(s)	16, 42, 113, 194, 571, 589, 940
BstMAI	GTCTC	2 cut(s)	667, 981
BstMBI	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
BstPI	GGTNACC	1 cut(s)	1096
BstSCI	CCNGG	2 cut(s)	993, 994
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	4 cut(s)	609, 695, 777, 953
BstV2I	GAAGAC	2 cut(s)	457, 966
BstX2I	RGATCY	3 cut(s)	13, 191, 568
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	3 cut(s)	13, 191, 568
BtgZI	GCGATG	1 cut(s)	701
BtsCI	GGATG	6 cut(s)	298, 496, 895, 940, 1004, 1090
BtsIMutI	CAGTG	1 cut(s)	1118
Cac8I	GCNNGC	2 cut(s)	140, 441
CciI	TCATGA	1 cut(s)	244
Cfr9I	CCCGGG	1 cut(s)	994
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	4 cut(s)	245, 478, 594, 809
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	3 cut(s)	81, 128, 666
DpnI	GATC	7 cut(s)	15, 41, 112, 193, 570, 588, 939
DpnII	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	58, 350, 1003
Eco88I	CYCGRG	3 cut(s)	782, 984, 994
Eco91I	GGTNACC	1 cut(s)	1096
EcoO65I	GGTNACC	1 cut(s)	1096
EcoT14I	CCWWGG	3 cut(s)	58, 350, 1003
ErhI	CCWWGG	3 cut(s)	58, 350, 1003
FaeI	CATG	4 cut(s)	248, 481, 597, 812
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FatI	CATG	4 cut(s)	244, 477, 593, 808
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	5 cut(s)	390, 598, 684, 791, 967
FokI	GGATG	6 cut(s)	305, 503, 902, 947, 1011, 1097
Fsp4HI	GCNGC	5 cut(s)	390, 598, 684, 791, 967
FspBI	CTAG	3 cut(s)	171, 1059, 1104
GluI	GCNGC	5 cut(s)	390, 598, 684, 791, 967
HapII	CCGG	1 cut(s)	995
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	4 cut(s)	248, 481, 597, 812
HinfI	GANTC	3 cut(s)	283, 692, 776
HpaII	CCGG	1 cut(s)	995
HphI	GGTGA	1 cut(s)	1090
Hpy166II	GTNNAC	3 cut(s)	134, 370, 880
Hpy188I	TCNGA	5 cut(s)	44, 509, 568, 900, 928
Hpy188III	TCNNGA	8 cut(s)	152, 171, 189, 245, 458, 572, 856, 986
Hpy8I	GTNNAC	3 cut(s)	134, 370, 880
Hpy99I	CGWCG	2 cut(s)	464, 568
HpyAV	CCTTC	4 cut(s)	132, 246, 745, 913
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	310, 462
HpyCH4V	TGCA	8 cut(s)	233, 296, 473, 597, 659, 683, 827, 1014
HpyF3I	CTNAG	3 cut(s)	81, 128, 666
HpySE526I	ACGT	2 cut(s)	310, 462
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	248, 481, 597, 812
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
LmnI	GCTCC	2 cut(s)	335, 787
Lsp1109I	GCAGC	4 cut(s)	609, 695, 777, 953
LweI	GCATC	3 cut(s)	244, 283, 989
MaeI	CTAG	3 cut(s)	171, 1059, 1104
MaeII	ACGT	2 cut(s)	310, 462
MaeIII	GTNAC	3 cut(s)	76, 306, 1096
MalI	GATC	7 cut(s)	15, 41, 112, 193, 570, 588, 939
MboI	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
MboII	GAAGA	9 cut(s)	105, 457, 687, 760, 769, 772, 775, 857, 971
MflI	RGATCY	3 cut(s)	13, 191, 568
MluCI	AATT	5 cut(s)	415, 427, 606, 1009, 1065
MmeI	TCCRAC	3 cut(s)	546, 577, 867
MnlI	CCTC	7 cut(s)	159, 168, 178, 324, 515, 601, 1086
MseI	TTAA	4 cut(s)	452, 537, 609, 702
MslI	CAYNNNNRTG	3 cut(s)	249, 322, 1083
MspI	CCGG	1 cut(s)	995
MspR9I	CCNGG	2 cut(s)	995, 996
MvnI	CGCG	1 cut(s)	138
NciI	CCSGG	2 cut(s)	995, 996
NdeII	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
NlaIII	CATG	4 cut(s)	248, 481, 597, 812
NlaIV	GGNNCC	2 cut(s)	64, 570
NmuCI	GTSAC	1 cut(s)	1096
PaeR7I	CTCGAG	1 cut(s)	984
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	283, 692, 776
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	5 cut(s)	391, 599, 685, 792, 968
PspEI	GGTNACC	1 cut(s)	1096
PspN4I	GGNNCC	2 cut(s)	64, 570
PsrI	GAACNNNNNNTAC	2 cut(s)	291, 323
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	3 cut(s)	13, 191, 568
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	3 cut(s)	249, 322, 1083
SaqAI	TTAA	4 cut(s)	452, 537, 609, 702
SatI	GCNGC	5 cut(s)	390, 598, 684, 791, 967
Sau3AI	GATC	7 cut(s)	13, 39, 110, 191, 568, 586, 937
ScrFI	CCNGG	2 cut(s)	995, 996
SfaNI	GCATC	3 cut(s)	244, 283, 989
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	984
SlaI	CTCGAG	1 cut(s)	984
SmaI	CCCGGG	1 cut(s)	996
SmiMI	CAYNNNNRTG	3 cut(s)	249, 322, 1083
SmlI	CTYRAG	3 cut(s)	150, 854, 984
SmoI	CTYRAG	3 cut(s)	150, 854, 984
Sse9I	AATT	5 cut(s)	415, 427, 606, 1009, 1065
SsiI	CCGC	2 cut(s)	5, 389
SspI	AATATT	3 cut(s)	104, 545, 945
SspMI	CTAG	3 cut(s)	171, 1059, 1104
StyD4I	CCNGG	2 cut(s)	993, 994
StyI	CCWWGG	3 cut(s)	58, 350, 1003
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	313, 465
TaqI	TCGA	6 cut(s)	286, 459, 774, 801, 940, 985
TasI	AATT	5 cut(s)	415, 427, 606, 1009, 1065
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	3 cut(s)	283, 692, 776
Tru1I	TTAA	4 cut(s)	452, 537, 609, 702
Tru9I	TTAA	4 cut(s)	452, 537, 609, 702
TscAI	CASTG	1 cut(s)	1118
TseFI	GTSAC	1 cut(s)	1096
TseI	GCWGC	4 cut(s)	597, 683, 790, 966
Tsp45I	GTSAC	1 cut(s)	1096
TspDTI	ATGAA	4 cut(s)	276, 876, 932, 1044
TspGWI	ACGGA	2 cut(s)	77, 538
TspMI	CCCGGG	1 cut(s)	994
TspRI	CASTG	1 cut(s)	1118
Van91I	CCANNNNNTGG	1 cut(s)	439
XbaI	TCTAGA	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1085
XhoI	CTCGAG	1 cut(s)	984
XmaI	CCCGGG	1 cut(s)	994
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	3 cut(s)	171, 1059, 1104
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.