Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

6670883 .. 6671235

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGCAAAAACCCTGGACCACAAGTACACTGCTCCTTTTCCTCCTCCAAGAAAACACCAAGACGTACAATACAAGCATCCTTGACATGGCGAGTAGTATTCCGTGCGGTCTGTAAGTCATGGCGGTCCTCTATTCCTCCCTTCAAGAACCTGCTCCAGTTACCCTTAGAAATGTCGGTTGCGTTCGGAAAGGACGGCGAATATACTAATTCCGAAGGCTTTGCCCTTGTGGAGAGCGTAGTCTATCATCTCGCACCTCCCACCGTAGCCAATTGCCCGCTCTCTTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

98

Amino Acids

10.73

Weight (kDa)

9.66

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	3 cut(s)	107, 124, 278
AfaI	GTAC	2 cut(s)	27, 67
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	17, 126
AvaII	GGWCC	2 cut(s)	17, 126
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	2 cut(s)	17, 126
BmgT120I	GGNCC	2 cut(s)	17, 126
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	87
BspACI	CCGC	3 cut(s)	107, 124, 278
BspMI	ACCTGC	1 cut(s)	159
BsrBI	CCGCTC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	17, 126
Csp6I	GTAC	2 cut(s)	26, 66
CviAII	CATG	2 cut(s)	87, 120
CviJI	RGCY	2 cut(s)	219, 269
CviKI_1	RGCY	2 cut(s)	219, 269
CviQI	GTAC	2 cut(s)	26, 66
DdeI	CTNAG	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	17, 126
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	90, 123
FaiI	YATR	3 cut(s)	88, 121, 204
FatI	CATG	2 cut(s)	86, 119
FauI	CCCGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	140
Hin1II	CATG	2 cut(s)	90, 123
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	188, 214
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	151, 209
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	90, 123
LmnI	GCTCC	2 cut(s)	38, 159
LpnPI	CCDG	3 cut(s)	27, 164, 170
LweI	GCATC	1 cut(s)	86
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	280
MfeI	CAATTG	1 cut(s)	271
MluCI	AATT	2 cut(s)	208, 271
MnlI	CCTC	5 cut(s)	52, 55, 139, 147, 267
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	15
NlaIII	CATG	2 cut(s)	90, 123
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	17, 126
RsaI	GTAC	2 cut(s)	27, 67
RsaNI	GTAC	2 cut(s)	26, 66
Sau96I	GGNCC	2 cut(s)	17, 126
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	3 cut(s)	67, 153, 259
SfaNI	GCATC	1 cut(s)	86
SinI	GGWCC	2 cut(s)	17, 126
Sse9I	AATT	2 cut(s)	208, 271
SsiI	CCGC	3 cut(s)	107, 124, 278
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	67
TasI	AATT	2 cut(s)	208, 271
TatI	WGTACW	1 cut(s)	25
TscAI	CASTG	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	17, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.