Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

17514765 .. 17517183

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G176700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCGAGTAGAATCCCAGGTGAACTGTTAGAGAGCATAGGAAAGTGCCTAAACACTAGAACAGATGTTTCTCGATTTCGTGCGGTGTGCAAGTCATTGCGGTCCTCCATCCCTCGCTTCGAAAAGAAGCTTCAATTTCCCATCAAAGTTCTCATTCGAAACACCAATGGCAGCAACACCACCTTTACCCTAACCGAGAGCATTGTCTTTCATCTTGCGCCTCCTAGAGATGATCCTCATAAAAGAGGTTGGTTGGTTAAGGTTGAAGAAGGAAAATATGGTGAAACTCGTATGTTGCATCCACTCTCCCAGTTTGTTGTAGGGAGACTGCCCCACTCGTTCCCAAAGGTATTTAACCTATTGGAATTTAGGGTTTTTGAATATGCAAGAGTTTACAGCATACATGACGATGGTTGGTGGGACCGTAATAATAAGGTGGCCTTGTCCATGAATCTCGGTTTCCCTGTGGTCATGATAATTGCCGATGGGGTATTATACCCAGGCGAATTAGATGTCAGCGTTAACAACTGCATTGAGGTCTCTCAGTTGGATCATGATCAACATTATGATTACGAAGATGTTATTTTCCACGAAGGGAAGTTCTACGCTGTCTGCCAGGACGGACAAGCTGTAGTAGTTGATTCTTGTCTGAATGTGAAAGTAGTTGCGCCGCCAATATTAGCTTGTTCGGGTGGTGATCACAAGAAGAGTTTGGTGGAGTCATCGGGGGAGTTGCTCTTAGTCGATAGGTATCCGAGTACAATGGGAGAAGATAGTTATTTAGACAAGTGGCTCGACATTGAGCTTAAATTCAAGGTTTTTAAGTTGAACACAGCTGAAAATCAATGGATTGAAGTTGATGAGAGGGATGCTTTGAGCGATCGAATATTGCTCGTGGGGGATGACAGCTGCTTCTCTGTTTCTGCTAGAGATTTTCCAGGATGTAAAGGGAATAGCATTTATTTCTCTAATTTCTTTTATATGAAGAATAATATGGAGGGTGAGTTTGGAGGAATGTTTAGTGAGATGGGAGTTTTCCGATTAGATTTTGGCAGTCACTTGCCCCTAACATATTATCCAAGCTGTGATAATATCTTCTACCCACCCCCAACTTGGACTTGGTTGTCAAGCAAGGAAAAGAAAAGGAAGAAGAAGATTTGGCGTCGTATTTCTTTACATGTAGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

397

Amino Acids

45.45

Weight (kDa)

6.28

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1123
AciI	CCGC	3 cut(s)	83, 100, 671
AclWI	GGATC	2 cut(s)	227, 558
AcsI	RAATTY	2 cut(s)	365, 809
AcyI	GRCGYC	1 cut(s)	1162
AfaI	GTAC	1 cut(s)	760
AfiI	CCNNNNNNNGG	1 cut(s)	1113
AflIII	ACRYGT	1 cut(s)	1177
AgsI	TTSAA	6 cut(s)	134, 266, 380, 814, 829, 854
AjnI	CCWGG	4 cut(s)	16, 499, 615, 937
AluBI	AGCT	7 cut(s)	130, 629, 683, 805, 836, 909, 1083
AluI	AGCT	7 cut(s)	130, 629, 683, 805, 836, 909, 1083
Alw26I	GTCTC	2 cut(s)	319, 544
AlwI	GGATC	2 cut(s)	227, 558
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	171, 909
ApoI	RAATTY	2 cut(s)	365, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	498, 530
AspLEI	GCGC	2 cut(s)	220, 670
AspS9I	GGNCC	2 cut(s)	102, 421
AsuHPI	GGTGA	4 cut(s)	32, 293, 707, 1013
AsuII	TTCGAA	2 cut(s)	120, 157
AvaII	GGWCC	2 cut(s)	102, 421
BauI	CACGAG	1 cut(s)	893
BbvI	GCAGC	2 cut(s)	183, 896
BccI	CCATC	5 cut(s)	116, 149, 404, 479, 1021
BciT130I	CCWGG	4 cut(s)	18, 501, 617, 939
BciVI	GTATCC	1 cut(s)	762
BclI	TGATCA	2 cut(s)	556, 697
BcoDI	GTCTC	2 cut(s)	319, 544
BfaI	CTAG	3 cut(s)	57, 225, 927
BfmI	CTRYAG	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	762
BisI	GCNGC	3 cut(s)	172, 671, 910
BlsI	GCNGC	3 cut(s)	173, 672, 911
Bme1390I	CCNGG	4 cut(s)	18, 501, 617, 939
Bme18I	GGWCC	2 cut(s)	102, 421
BmgT120I	GGNCC	2 cut(s)	102, 421
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	4 cut(s)	18, 501, 617, 939
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	307, 859
BmuI	ACTGGG	1 cut(s)	304
Bpu14I	TTCGAA	2 cut(s)	120, 157
BsaBI	GATNNNNATC	2 cut(s)	555, 750
BsaHI	GRCGYC	1 cut(s)	1162
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	16, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	989, 1019
Bsc4I	CCNNNNNNNGG	1 cut(s)	1113
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	2 cut(s)	555, 750
BseBI	CCWGG	4 cut(s)	18, 501, 617, 939
BseDI	CCNNGG	2 cut(s)	16, 499
BseGI	GGATG	5 cut(s)	108, 298, 874, 907, 947
BseJI	GATNNNNATC	2 cut(s)	555, 750
BseLI	CCNNNNNNNGG	1 cut(s)	1113
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	183, 896
Bsh1285I	CGRYCG	1 cut(s)	883
BshFI	GGCC	1 cut(s)	440
BsiEI	CGRYCG	1 cut(s)	883
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	1113
BsmAI	GTCTC	2 cut(s)	319, 544
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	440
Bso31I	GGTCTC	1 cut(s)	544
Bsp119I	TTCGAA	2 cut(s)	120, 157
Bsp143I	GATC	5 cut(s)	232, 550, 556, 697, 880
BspACI	CCGC	3 cut(s)	83, 100, 671
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	556
BspHI	TCATGA	2 cut(s)	471, 553
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	227, 558
BspT104I	TTCGAA	2 cut(s)	120, 157
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	16, 499
BssMI	GATC	5 cut(s)	232, 550, 556, 697, 880
BssNI	GRCGYC	1 cut(s)	1162
BssSI	CACGAG	1 cut(s)	893
Bst2BI	CACGAG	1 cut(s)	893
Bst2UI	CCWGG	4 cut(s)	18, 501, 617, 939
Bst4CI	ACNGT	2 cut(s)	27, 425
Bst6I	CTCTTC	1 cut(s)	701
BstACI	GRCGYC	1 cut(s)	1162
BstBI	TTCGAA	2 cut(s)	120, 157
BstDEI	CTNAG	2 cut(s)	543, 739
BstF5I	GGATG	5 cut(s)	108, 298, 874, 907, 947
BstHHI	GCGC	2 cut(s)	220, 670
BstKTI	GATC	5 cut(s)	235, 553, 559, 700, 883
BstMAI	GTCTC	2 cut(s)	319, 544
BstMBI	GATC	5 cut(s)	232, 550, 556, 697, 880
BstMCI	CGRYCG	1 cut(s)	883
BstNI	CCWGG	4 cut(s)	18, 501, 617, 939
BstNSI	RCATGY	1 cut(s)	1181
BstSCI	CCNGG	4 cut(s)	16, 499, 615, 937
BstSFI	CTRYAG	1 cut(s)	630
BstV1I	GCAGC	2 cut(s)	183, 896
BsuI	GTATCC	1 cut(s)	762
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	5 cut(s)	108, 298, 874, 907, 947
CciI	TCATGA	2 cut(s)	471, 553
CfoI	GCGC	2 cut(s)	220, 670
Cfr13I	GGNCC	2 cut(s)	102, 421
CseI	GACGC	1 cut(s)	1151
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	5 cut(s)	404, 448, 472, 554, 1178
CviJI	RGCY	9 cut(s)	130, 440, 629, 683, 793, 805, 836, 909, 1083
CviKI_1	RGCY	9 cut(s)	130, 440, 629, 683, 793, 805, 836, 909, 1083
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	2 cut(s)	543, 739
DpnI	GATC	5 cut(s)	234, 552, 558, 699, 882
DpnII	GATC	5 cut(s)	232, 550, 556, 697, 880
DrdI	GACNNNNNNGTC	1 cut(s)	1123
DseDI	GACNNNNNNGTC	1 cut(s)	1123
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	102, 421
EcoRII	CCWGG	4 cut(s)	16, 499, 615, 937
FaeI	CATG	5 cut(s)	407, 451, 475, 557, 1181
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	5 cut(s)	403, 447, 471, 553, 1177
FbaI	TGATCA	2 cut(s)	556, 697
Fnu4HI	GCNGC	3 cut(s)	172, 671, 910
FokI	GGATG	5 cut(s)	95, 285, 881, 914, 954
Fsp4HI	GCNGC	3 cut(s)	172, 671, 910
FspBI	CTAG	3 cut(s)	57, 225, 927
GlaI	GCGC	2 cut(s)	219, 669
GluI	GCNGC	3 cut(s)	172, 671, 910
HaeIII	GGCC	1 cut(s)	440
HgaI	GACGC	1 cut(s)	1151
HhaI	GCGC	2 cut(s)	220, 670
Hin1I	GRCGYC	1 cut(s)	1162
Hin1II	CATG	5 cut(s)	407, 451, 475, 557, 1181
Hin6I	GCGC	2 cut(s)	218, 668
HinP1I	GCGC	2 cut(s)	218, 668
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	12, 451, 641, 719
HpaI	GTTAAC	1 cut(s)	523
HphI	GGTGA	4 cut(s)	32, 293, 707, 1013
Hpy166II	GTNNAC	3 cut(s)	23, 394, 523
Hpy188I	TCNGA	3 cut(s)	651, 756, 1040
Hpy188III	TCNNGA	3 cut(s)	72, 472, 554
Hpy8I	GTNNAC	3 cut(s)	23, 394, 523
Hpy99I	CGWCG	1 cut(s)	1167
HpyAV	CCTTC	2 cut(s)	263, 587
HpyCH4III	ACNGT	2 cut(s)	27, 425
HpyCH4V	TGCA	4 cut(s)	90, 298, 386, 531
HpyF3I	CTNAG	2 cut(s)	543, 739
Hsp92I	GRCGYC	1 cut(s)	1162
Hsp92II	CATG	5 cut(s)	407, 451, 475, 557, 1181
HspAI	GCGC	2 cut(s)	218, 668
Ksp22I	TGATCA	2 cut(s)	556, 697
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	232, 550, 556, 697, 880
Lsp1109I	GCAGC	2 cut(s)	183, 896
LweI	GCATC	2 cut(s)	307, 859
MaeI	CTAG	3 cut(s)	57, 225, 927
MaeIII	GTNAC	1 cut(s)	1055
MalI	GATC	5 cut(s)	234, 552, 558, 699, 882
MboI	GATC	5 cut(s)	232, 550, 556, 697, 880
MboII	GAAGA	9 cut(s)	278, 587, 718, 782, 997, 1087, 1159, 1162, 1165
MluCI	AATT	7 cut(s)	134, 365, 477, 506, 809, 970, 1186
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	9 cut(s)	115, 123, 231, 239, 246, 529, 858, 991, 1004
MseI	TTAA	6 cut(s)	258, 354, 522, 807, 822, 1189
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	836, 909
MspR9I	CCNGG	4 cut(s)	18, 501, 617, 939
MvaI	CCWGG	4 cut(s)	18, 501, 617, 939
NdeII	GATC	5 cut(s)	232, 550, 556, 697, 880
NlaIII	CATG	5 cut(s)	407, 451, 475, 557, 1181
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	1055
NspI	RCATGY	1 cut(s)	1181
NspV	TTCGAA	2 cut(s)	120, 157
PagI	TCATGA	2 cut(s)	471, 553
PciI	ACATGT	1 cut(s)	1177
PfeI	GAWTC	3 cut(s)	12, 451, 641
PfoI	TCCNGGA	1 cut(s)	937
PkrI	GCNGC	3 cut(s)	173, 672, 911
Ple19I	CGATCG	1 cut(s)	883
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PscI	ACATGT	1 cut(s)	1177
Psp6I	CCWGG	4 cut(s)	16, 499, 615, 937
PspGI	CCWGG	4 cut(s)	16, 499, 615, 937
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	2 cut(s)	102, 421
PvuI	CGATCG	1 cut(s)	883
PvuII	CAGCTG	2 cut(s)	836, 909
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	6 cut(s)	258, 354, 522, 807, 822, 1189
SatI	GCNGC	3 cut(s)	172, 671, 910
Sau3AI	GATC	5 cut(s)	232, 550, 556, 697, 880
Sau96I	GGNCC	2 cut(s)	102, 421
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	4 cut(s)	18, 501, 617, 939
SfaNI	GCATC	2 cut(s)	307, 859
SfcI	CTRYAG	1 cut(s)	630
SfuI	TTCGAA	2 cut(s)	120, 157
SinI	GGWCC	2 cut(s)	102, 421
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	7 cut(s)	134, 365, 477, 506, 809, 970, 1186
SsiI	CCGC	3 cut(s)	83, 100, 671
SspI	AATATT	2 cut(s)	678, 888
SspMI	CTAG	3 cut(s)	57, 225, 927
StyD4I	CCNGG	4 cut(s)	16, 499, 615, 937
TaaI	ACNGT	2 cut(s)	27, 425
TaqI	TCGA	6 cut(s)	73, 120, 157, 744, 795, 883
TasI	AATT	7 cut(s)	134, 365, 477, 506, 809, 970, 1186
TatI	WGTACW	1 cut(s)	758
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	3 cut(s)	12, 451, 641
Tru1I	TTAA	6 cut(s)	258, 354, 522, 807, 822, 1189
Tru9I	TTAA	6 cut(s)	258, 354, 522, 807, 822, 1189
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	2 cut(s)	171, 909
Tsp45I	GTSAC	1 cut(s)	1055
TspDTI	ATGAA	3 cut(s)	200, 464, 998
TspGWI	ACGGA	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	102, 421
XapI	RAATTY	2 cut(s)	365, 809
XceI	RCATGY	1 cut(s)	1181
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1110, 1116
XspI	CTAG	3 cut(s)	57, 225, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.