Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8490487.1

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

1450 .. 2040

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8490487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgacagaaagacaaagatctgatacatgtggaaatcagagaggggaatgttggagtgatcttccggttgaattattacagagcattgcaaagcggcttgataccaaaattgatgtttcaacatcccgtgctgtttgtaaatcatggcggttgtctattcctcctctcactgtgaactctccacccatcaaagtacatctcggtaatgttatcaggagaggagtacgacttgtgaaaaaaacaaccctcaggatgagggtagtctatcatgtggcacctcaaccacctgcttcaaattcaaggggttggttggttaaggtcaccgaaggtgaagttccactgcacaaaactcatatcatgttacatcctctctctggaaccccattcccaaaaaacccggtagctaacccattattaccaaaggaattgaacttttatgattttcgggtatctgagttgtcgagaacttatcacactccttacacttttccggtggcagtgtccttgaattctgattgtcctgcacttatgatgattgttgaaggaaaattgtaccactgcaaattaggtgttgatggtgaaattccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

196

Amino Acids

22.03

Weight (kDa)

9.61

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	274
AciI	CCGC	2 cut(s)	94, 148
AcsI	RAATTY	3 cut(s)	295, 508, 582
AfaI	GTAC	3 cut(s)	195, 225, 554
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	7 cut(s)	71, 120, 294, 300, 430, 508, 542
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
ApoI	RAATTY	3 cut(s)	295, 508, 582
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	313, 341, 590
AxyI	CCTNAGG	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	274
BccI	CCATC	2 cut(s)	194, 569
BcnI	CCSGG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	276, 379
BmrFI	CCNGG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	398
BsaWI	WCCGGW	2 cut(s)	64, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	122, 258, 364
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	262, 444
BseRI	GAGGAG	2 cut(s)	153, 234
BsgI	GTGCAG	2 cut(s)	326, 507
BshNI	GGYRCC	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	65, 398, 491
BslI	CCNNNNNNNGG	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	17, 58
BspACI	CCGC	2 cut(s)	94, 148
BspCNI	CTCAG	2 cut(s)	261, 445
BspLI	GGNNCC	2 cut(s)	276, 379
BspMI	ACCTGC	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	84
BssMI	GATC	2 cut(s)	17, 58
Bst4CI	ACNGT	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	248, 453
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	122, 258, 364
BstKTI	GATC	2 cut(s)	20, 61
BstMBI	GATC	2 cut(s)	17, 58
BstNSI	RCATGY	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	122, 258, 364
BtsI	GCAGTG	3 cut(s)	338, 504, 556
BtsIMutI	CAGTG	4 cut(s)	168, 338, 504, 556
BveI	ACCTGC	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	194, 224, 553
CviAII	CATG	4 cut(s)	27, 144, 269, 358
CviJI	RGCY	2 cut(s)	97, 404
CviKI_1	RGCY	2 cut(s)	97, 404
CviQI	GTAC	3 cut(s)	194, 224, 553
DdeI	CTNAG	2 cut(s)	248, 453
DpnI	GATC	2 cut(s)	19, 60
DpnII	GATC	2 cut(s)	17, 58
Eco81I	CCTNAGG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	508
FaeI	CATG	4 cut(s)	30, 147, 272, 361
FaiI	YATR	8 cut(s)	28, 145, 270, 354, 359, 438, 530, 589
FatI	CATG	4 cut(s)	26, 143, 268, 357
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	3 cut(s)	109, 265, 351
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HapII	CCGG	3 cut(s)	65, 398, 491
Hin1II	CATG	4 cut(s)	30, 147, 272, 361
HpaII	CCGG	3 cut(s)	65, 398, 491
HphI	GGTGA	3 cut(s)	313, 341, 590
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	4 cut(s)	22, 39, 454, 514
Hpy188III	TCNNGA	4 cut(s)	214, 250, 375, 462
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	320, 536
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	89, 343, 524, 561
HpyF3I	CTNAG	2 cut(s)	248, 453
Hsp92II	CATG	4 cut(s)	30, 147, 272, 361
Kzo9I	GATC	2 cut(s)	17, 58
LpnPI	CCDG	8 cut(s)	78, 199, 235, 300, 360, 411, 504, 534
MaeIII	GTNAC	2 cut(s)	319, 360
MalI	GATC	2 cut(s)	19, 60
MboI	GATC	2 cut(s)	17, 58
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	8 cut(s)	71, 108, 295, 425, 508, 548, 563, 582
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	8 cut(s)	35, 171, 174, 212, 249, 257, 288, 378
MseI	TTAA	1 cut(s)	315
MspI	CCGG	3 cut(s)	65, 398, 491
MspR9I	CCNGG	1 cut(s)	398
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	2 cut(s)	17, 58
NlaIII	CATG	4 cut(s)	30, 147, 272, 361
NlaIV	GGNNCC	2 cut(s)	276, 379
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	295
PciI	ACATGT	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	96
PscI	ACATGT	1 cut(s)	26
PspEI	GGTNACC	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	276, 379
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	3 cut(s)	195, 225, 554
RsaNI	GTAC	3 cut(s)	194, 224, 553
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	17, 58
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	6 cut(s)	280, 289, 321, 331, 406, 571
Sse9I	AATT	8 cut(s)	71, 108, 295, 425, 508, 548, 563, 582
SsiI	CCGC	2 cut(s)	94, 148
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	461
TasI	AATT	8 cut(s)	71, 108, 295, 425, 508, 548, 563, 582
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	4 cut(s)	175, 345, 504, 563
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	4 cut(s)	175, 345, 504, 563
XapI	RAATTY	3 cut(s)	295, 508, 582
XceI	RCATGY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.