Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

17511233 .. 17513927

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAACCAGTCGTCCCATGGAACAATCTTCCAACCGACTTATTAGAGGCCGTAGGAAAGCGCCTCAAAACTAAAACCGATGTCTCACGATTTCGTGCCATCTGTAGGTCATGGCGATCATCTGTTCTTCCCTTTGATCAGAAACAACCCCGTTTTCCCATCAGAATTATGATGAAGTTTCCTTTTCCTGTTAACTGCTTTTTCTTGACAATCACCGAGGACACAGTCTACCATCTAGTACCTCCTCCCAACATAAACTCAGATGATTCTGCTTCGACTTCGAGTACAAGGGGTTGGGTGGTTAGGCTCAGGGAAGGAGAATCAGGTGAACCTAGCATGTTACATCCACTCTCCTCCTCTTTCCACATAAAGCGTTTGCCCAAGTCGGTGTTTCCAAAGCTAATAAACTTGTTGGAATTTCGAGTATTTGAATTGGCAAAAACTTACACCATGTACCACTCTGACCATAGTGTTAGTAGTTACAGAGTGGCCATATCACTGAGCCCTGATTGGCCTGCAATCATGGTTGTTGCGGCTGGAAAATTATACCACTGCAAATTAGGCCCTGACATTGAAATGTGCACCAGGGTCGATATAACCTCTGAGGTTTTTGAAGATGTTATTTGTTTTGAGGGAAAGTTCTATGCTGTTTGCCACAATGGCACAGCTGTGGTGGTTGATCCTTCCTTGGAGATGACACTGATTGCATCTCCGATAAGTCCTGATCATGGCAGCAGCGTCCATTGCATCAAGAATTTAGTGCAGTCACTGGGGGAGATAATTCTAGTGGAAAGATACCCGAGCAGAATGAAACAACGTCGTCTATTTCCGGTTAAATTCAGGGTTTACAAGTTGAATGCAGTTGAGAGGAAATGGGTTGAGATGGAAGGTTTGGATGGTAGGATATTGTGTGTGGAAAATCTCTACAGCTTCTCTGTTCCTGCTGGGGATTTTCCTGGATGTCAAAGGAGCTGCATTTATTTCTCTGATCCTTACTTTCCTGGATTATTCATTAGGAAGAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

343

Amino Acids

39.04

Weight (kDa)

9.02

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	2 cut(s)	674, 983
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	4 cut(s)	416, 754, 836, 1023
AfaI	GTAC	3 cut(s)	240, 286, 455
AfiI	CCNNNNNNNGG	2 cut(s)	105, 728
AgsI	TTSAA	4 cut(s)	431, 575, 614, 856
AjnI	CCWGG	3 cut(s)	584, 955, 1000
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	4 cut(s)	400, 668, 930, 972
AluI	AGCT	4 cut(s)	400, 668, 930, 972
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	674, 983
AlwNI	CAGNNNCTG	1 cut(s)	769
Ama87I	CYCGRG	1 cut(s)	799
AoxI	GGCC	4 cut(s)	48, 489, 512, 562
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	732, 735, 972
ApoI	RAATTY	4 cut(s)	416, 754, 836, 1023
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	2 cut(s)	205, 338
AvaI	CYCGRG	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	744, 747, 959
BccI	CCATC	5 cut(s)	107, 167, 240, 877, 890
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	3 cut(s)	586, 957, 1002
BclI	TGATCA	2 cut(s)	136, 724
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	3 cut(s)	236, 333, 785
BfmI	CTRYAG	2 cut(s)	103, 925
BfoI	RGCGCY	1 cut(s)	64
BglI	GCCNNNNNGGC	1 cut(s)	660
BisI	GCNGC	4 cut(s)	534, 733, 736, 973
BlsI	GCNGC	4 cut(s)	535, 734, 737, 974
Bme1390I	CCNGG	3 cut(s)	586, 957, 1002
BmeT110I	CYCGRG	1 cut(s)	799
BmgT120I	GGNCC	1 cut(s)	563
BmrFI	CCNGG	3 cut(s)	586, 957, 1002
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	716, 756
BmuI	ACTGGG	1 cut(s)	779
Bpu10I	CCTNAGC	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	17, 216, 585, 687
BsaWI	WCCGGW	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 728
Bse1I	ACTGG	2 cut(s)	8, 774
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	3 cut(s)	586, 957, 1002
BseDI	CCNNGG	4 cut(s)	17, 216, 585, 687
BseGI	GGATG	3 cut(s)	343, 901, 965
BseLI	CCNNNNNNNGG	2 cut(s)	105, 728
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	4 cut(s)	273, 322, 491, 594
BseNI	ACTGG	2 cut(s)	8, 774
BseRI	GAGGAG	3 cut(s)	234, 343, 346
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	744, 747, 959
BseYI	CCCAGC	1 cut(s)	944
BsgI	GTGCAG	1 cut(s)	782
BshFI	GGCC	4 cut(s)	50, 491, 514, 564
BsiHKAI	GWGCWC	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	799
BsiSI	CCGG	1 cut(s)	830
BslI	CCNNNNNNNGG	2 cut(s)	105, 728
BsmAI	GTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	4 cut(s)	50, 491, 514, 564
BsoBI	CYCGRG	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	506, 584
Bsp143I	GATC	5 cut(s)	116, 136, 679, 724, 988
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	4 cut(s)	50, 491, 514, 564
BspCNI	CTCAG	4 cut(s)	272, 321, 492, 595
BspPI	GGATC	2 cut(s)	674, 983
BsrDI	GCAATG	1 cut(s)	742
BsrI	ACTGG	2 cut(s)	8, 774
BssECI	CCNNGG	4 cut(s)	17, 216, 585, 687
BssMI	GATC	5 cut(s)	116, 136, 679, 724, 988
BssT1I	CCWWGG	2 cut(s)	17, 687
Bst2UI	CCWGG	3 cut(s)	586, 957, 1002
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	4 cut(s)	259, 308, 500, 603
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	3 cut(s)	343, 901, 965
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	5 cut(s)	119, 139, 682, 727, 991
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	5 cut(s)	116, 136, 679, 724, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	561, 660, 744
BstNI	CCWGG	3 cut(s)	586, 957, 1002
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	3 cut(s)	584, 955, 1000
BstSFI	CTRYAG	2 cut(s)	103, 925
BstSLI	GKGCMC	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	744, 747, 959
BsuRI	GGCC	4 cut(s)	50, 491, 514, 564
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	343, 901, 965
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	4 cut(s)	497, 550, 698, 767
Cac8I	GCNNGC	1 cut(s)	516
CaiI	CAGNNNCTG	1 cut(s)	769
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	563
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	3 cut(s)	239, 285, 454
CviAII	CATG	6 cut(s)	18, 111, 337, 451, 523, 728
CviQI	GTAC	3 cut(s)	239, 285, 454
DdeI	CTNAG	4 cut(s)	259, 308, 500, 603
DpnI	GATC	5 cut(s)	118, 138, 681, 726, 990
DpnII	GATC	5 cut(s)	116, 136, 679, 724, 988
EaeI	YGGCCR	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	17, 687
Eco24I	GRGCYC	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	799
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRII	CCWGG	3 cut(s)	584, 955, 1000
EcoT14I	CCWWGG	2 cut(s)	17, 687
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	17, 687
FaeI	CATG	6 cut(s)	21, 114, 340, 454, 526, 731
FatI	CATG	6 cut(s)	17, 110, 336, 450, 522, 727
FbaI	TGATCA	2 cut(s)	136, 724
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	534, 733, 736, 973
FokI	GGATG	3 cut(s)	330, 908, 972
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	4 cut(s)	534, 733, 736, 973
FspBI	CTAG	3 cut(s)	236, 333, 785
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	4 cut(s)	534, 733, 736, 973
GsaI	CCCAGC	1 cut(s)	948
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	4 cut(s)	50, 491, 514, 564
HapII	CCGG	1 cut(s)	830
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	6 cut(s)	21, 114, 340, 454, 526, 731
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	266, 320
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	2 cut(s)	205, 338
Hpy166II	GTNNAC	5 cut(s)	193, 229, 329, 582, 847
Hpy188I	TCNGA	7 cut(s)	141, 164, 262, 463, 604, 714, 988
Hpy188III	TCNNGA	4 cut(s)	87, 205, 722, 751
Hpy8I	GTNNAC	5 cut(s)	193, 229, 329, 582, 847
Hpy99I	CGWCG	1 cut(s)	822
HpyAV	CCTTC	3 cut(s)	308, 693, 881
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	817
HpyCH4V	TGCA	8 cut(s)	518, 555, 582, 707, 747, 763, 860, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	561, 660, 744
HpyF3I	CTNAG	4 cut(s)	259, 308, 500, 603
HpySE526I	ACGT	1 cut(s)	817
Hsp92II	CATG	6 cut(s)	21, 114, 340, 454, 526, 731
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	136, 724
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	116, 136, 679, 724, 988
LmnI	GCTCC	1 cut(s)	969
Lsp1109I	GCAGC	3 cut(s)	744, 747, 959
LweI	GCATC	2 cut(s)	716, 756
MaeI	CTAG	3 cut(s)	236, 333, 785
MaeII	ACGT	1 cut(s)	817
MaeIII	GTNAC	3 cut(s)	339, 479, 765
MalI	GATC	5 cut(s)	118, 138, 681, 726, 990
MboI	GATC	5 cut(s)	116, 136, 679, 724, 988
MboII	GAAGA	3 cut(s)	20, 119, 626
MhlI	GDGCHC	2 cut(s)	506, 584
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	9 cut(s)	165, 416, 431, 542, 557, 754, 780, 836, 1023
MluNI	TGGCCA	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	56, 393
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	3 cut(s)	192, 834, 1027
MslI	CAYNNNNRTG	2 cut(s)	575, 668
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	1 cut(s)	830
MspR9I	CCNGG	3 cut(s)	586, 957, 1002
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	3 cut(s)	586, 957, 1002
MwoI	GCNNNNNNNGC	3 cut(s)	561, 660, 744
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	116, 136, 679, 724, 988
NlaIII	CATG	6 cut(s)	21, 114, 340, 454, 526, 731
NmuCI	GTSAC	1 cut(s)	765
NspI	RCATGY	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	668
PctI	GAATGC	1 cut(s)	862
PfeI	GAWTC	2 cut(s)	266, 320
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	2 cut(s)	955, 1000
PkrI	GCNGC	4 cut(s)	535, 734, 737, 974
Psp6I	CCWGG	3 cut(s)	584, 955, 1000
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	3 cut(s)	584, 955, 1000
PspPI	GGNCC	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	769
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	240, 286, 455
RsaNI	GTAC	3 cut(s)	239, 285, 454
RseI	CAYNNNNRTG	2 cut(s)	575, 668
SaqAI	TTAA	3 cut(s)	192, 834, 1027
SatI	GCNGC	4 cut(s)	534, 733, 736, 973
Sau3AI	GATC	5 cut(s)	116, 136, 679, 724, 988
Sau96I	GGNCC	1 cut(s)	563
ScrFI	CCNGG	3 cut(s)	586, 957, 1002
SduI	GDGCHC	2 cut(s)	506, 584
SfaNI	GCATC	2 cut(s)	716, 756
SfcI	CTRYAG	2 cut(s)	103, 925
SmiMI	CAYNNNNRTG	2 cut(s)	575, 668
Sse9I	AATT	9 cut(s)	165, 416, 431, 542, 557, 754, 780, 836, 1023
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	3 cut(s)	236, 333, 785
StyD4I	CCNGG	3 cut(s)	584, 955, 1000
StyI	CCWWGG	2 cut(s)	17, 687
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	820
TaqI	TCGA	4 cut(s)	275, 281, 421, 591
TasI	AATT	9 cut(s)	165, 416, 431, 542, 557, 754, 780, 836, 1023
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	2 cut(s)	266, 320
Tru1I	TTAA	3 cut(s)	192, 834, 1027
Tru9I	TTAA	3 cut(s)	192, 834, 1027
TscAI	CASTG	4 cut(s)	504, 557, 705, 774
TseFI	GTSAC	1 cut(s)	765
TseI	GCWGC	3 cut(s)	732, 735, 972
Tsp45I	GTSAC	1 cut(s)	765
TspDTI	ATGAA	4 cut(s)	17, 188, 824, 1000
TspRI	CASTG	4 cut(s)	504, 557, 705, 774
Tth111I	GACNNNGTC	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	580
XapI	RAATTY	4 cut(s)	416, 754, 836, 1023
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	3 cut(s)	236, 333, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.