Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

82163373 .. 82163972

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCCGTGAGATCATATCCAGTACGCGTAGATCTGCTAAATAATAAAGATGAACCTTTTGATGATGTCATTTTCTATCAAGGAAAGTTCTATGCTGTCTCCAAGTATGGAAGAGCTATAGTGCTGCATTCTTCCTCGACGAATTGGGCAGATATTGCGTCTCCAGTATTCCCTAAGGGTTTTGACAAGACGAAGAAGAAGAATTATTGGGTGCAATCATTGGGGGAGCTGCTTGTAGTTGAGAGAGATGGGTGTGCATTTGTGGGAAAAGGTGGCTGTGTAGACTACATGCTTAAGACTGAAGTTAAGTTCAGGGTTTACAAGTTGAATGAAATTAGGAAGCAGTGGGTTGAGATGGAAGCTTCGGATTTGAATGATCGAATCTTGTTTGTGGGGGAGGACTGCTGCTTCTCAGTTTCTACTCGAGACTTCCCTGGATGCCGAGGAAGTTGCATTTATTTCTGTTATGAGCAGAATAATAAATGGGATGGTGATGAAAACTGTAGTGGAATTGGAGTGTTCAACTTGGATGATGGAAGGGGGCTGCGCTTAGAATGTCACCCACCCAGAACTAATATCTTTATGCCAACCCCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

199

Amino Acids

22.78

Weight (kDa)

6.15

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	15 - 175	9.1e-32	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	328, 373, 523
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	3 cut(s)	116, 229, 362
AluI	AGCT	3 cut(s)	116, 229, 362
Alw26I	GTCTC	3 cut(s)	103, 165, 420
Ama87I	CYCGRG	1 cut(s)	423
ApeKI	GCWGC	4 cut(s)	124, 229, 405, 544
AspLEI	GCGC	1 cut(s)	549
AsuHPI	GGTGA	2 cut(s)	503, 551
AvaI	CYCGRG	1 cut(s)	423
AxyI	CCTNAGG	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	111, 216, 392, 531
BccI	CCATC	4 cut(s)	242, 349, 482, 527
BcgI	CGANNNNNNTGC	2 cut(s)	432, 466
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	103, 165, 420
BfmI	CTRYAG	2 cut(s)	117, 502
BfrI	CTTAAG	1 cut(s)	293
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	4 cut(s)	125, 230, 406, 545
BlsI	GCNGC	4 cut(s)	126, 231, 407, 546
Bme1390I	CCNGG	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	433, 442
Bse1I	ACTGG	2 cut(s)	20, 164
Bse21I	CCTNAGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	433, 442
BseGI	GGATG	3 cut(s)	443, 493, 535
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	20, 164
BseXI	GCAGC	4 cut(s)	111, 216, 392, 531
Bsh1236I	CGCG	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	423
BsmAI	GTCTC	3 cut(s)	103, 165, 420
BsmBI	CGTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	11, 31, 376
BspCNI	CTCAG	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	106
BspTI	CTTAAG	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	20, 164
BssECI	CCNNGG	2 cut(s)	433, 442
BssMI	GATC	3 cut(s)	11, 31, 376
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	106
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstDEI	CTNAG	3 cut(s)	174, 412, 550
BstF5I	GGATG	3 cut(s)	443, 493, 535
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	3 cut(s)	14, 34, 379
BstMAI	GTCTC	3 cut(s)	103, 165, 420
BstMBI	GATC	3 cut(s)	11, 31, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	117, 502
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	111, 216, 392, 531
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	443, 493, 535
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	549
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	5 cut(s)	116, 229, 276, 362, 544
CviKI_1	RGCY	5 cut(s)	116, 229, 276, 362, 544
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	3 cut(s)	174, 412, 550
DpnI	GATC	3 cut(s)	13, 33, 378
DpnII	GATC	3 cut(s)	11, 31, 376
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	292
FaiI	YATR	7 cut(s)	16, 93, 108, 119, 290, 468, 584
FatI	CATG	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	125, 230, 406, 545
FokI	GGATG	3 cut(s)	450, 500, 542
Fsp4HI	GCNGC	4 cut(s)	125, 230, 406, 545
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	4 cut(s)	125, 230, 406, 545
GsuI	CTGGAG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	1 cut(s)	381
HphI	GGTGA	2 cut(s)	503, 551
Hpy166II	GTNNAC	2 cut(s)	283, 319
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	2 cut(s)	283, 319
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	4 cut(s)	127, 214, 257, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	3 cut(s)	174, 412, 550
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	11, 31, 376
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	33, 177, 298, 420, 447, 580
Lsp1109I	GCAGC	4 cut(s)	111, 216, 392, 531
LweI	GCATC	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	3 cut(s)	13, 33, 378
MboI	GATC	3 cut(s)	11, 31, 376
MboII	GAAGA	5 cut(s)	123, 123, 205, 208, 211
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	4 cut(s)	142, 202, 333, 510
MluI	ACGCGT	1 cut(s)	25
MnlI	CCTC	3 cut(s)	145, 391, 437
MseI	TTAA	2 cut(s)	294, 306
MspCI	CTTAAG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	3 cut(s)	11, 31, 376
NlaIII	CATG	1 cut(s)	292
NmeAIII	GCCGAG	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	381
PkrI	GCNGC	4 cut(s)	126, 231, 407, 546
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	294, 306
SatI	GCNGC	4 cut(s)	125, 230, 406, 545
Sau3AI	GATC	3 cut(s)	11, 31, 376
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	5 cut(s)	58, 118, 231, 274, 364
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	2 cut(s)	117, 502
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	293, 423
SmoI	CTYRAG	2 cut(s)	293, 423
Sse9I	AATT	4 cut(s)	142, 202, 333, 510
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	3 cut(s)	137, 379, 424
TasI	AATT	4 cut(s)	142, 202, 333, 510
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	2 cut(s)	294, 306
Tru9I	TTAA	2 cut(s)	294, 306
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	4 cut(s)	124, 229, 405, 544
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	66, 345, 510
TspRI	CASTG	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.