Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9511801 .. 9512682

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGGGAACGGGGCTGGTTGATTCGATTGGATGCAGAACAAAAGTTACGTCCTCCATTATCGTGGAGTAATGGAGCCTTGGAAAAGCCAAGGGTAATAAACACAGTAGACTTTGGCGTACTTGAAGTGGCAAAACCTTATCTCTTGGCAAGTAATTACGACAAGAATTACCACAAGCTGGCTGTTTCCTTAAATCTCGACGTCTTCCCTGCAGTCATGCTGGTTAGGGATGGAGTTTTATACCTCGGAAAGTGGTCTGGTGGTGGTGTTGAAGTTAAAGAATATTCCGTCCAACTCTCCCCGTCGAATCCTGATGATGATGATGATCCCTCATGCAGCAAAACAATTAAAGCTAATGATTATGATGATGTTATTTTTTACCAAGGAAAGTTTTGTGCAGTCTCTCAGTCTGGGAAACTTGCAGCGATGGATTCTTCCTTTAAGTGGAAAGTGATTGCGTTTCCAGTATCTACTTCAATGTGGTGGAAGAAGGAGAAGAAGAAGAACTTGGTCGAATCTCTCGGGGAGCTGCTTTTAGTCGAAAGACATGGTTCTACTTTTGTTGCAAAACATTGTTCTGTGGAAGATATGCTCAAGAATGAAGTCAAGTTCAAGGTTTACAAGTTGGATGGAGTTCGGAAGCAATGGGTTGAGATGAAGGGTTCGGATTTGGATGATCGAATATTTTTTGTGGGGGAAGACTGCTGCTTTTCAGTTTCTACTCGAGACTTCCCGGGATGCCAAAGGAATTGCATGTATTTTTGTTACGAAGTTTGGTGTGGTAAGAATGTCATCTCTAGTAGAATTGGAGTGTTCCACTTGGATGTTGGGAGGGGGTCGCCACTAGAAGCCAGTGCTAACATCTTTCTGCCACCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

293

Amino Acids

33.05

Weight (kDa)

6.89

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	106 - 272	2.7e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	178, 444
AgsI	TTSAA	4 cut(s)	125, 272, 477, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	3 cut(s)	178, 353, 529
AluI	AGCT	3 cut(s)	178, 353, 529
Alw26I	GTCTC	2 cut(s)	406, 720
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	3 cut(s)	521, 723, 733
ApeKI	GCWGC	4 cut(s)	336, 422, 529, 705
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AsuC2I	CCSGG	2 cut(s)	734, 735
AvaI	CYCGRG	3 cut(s)	521, 723, 733
BbsI	GAAGAC	2 cut(s)	196, 705
BbvI	GCAGC	4 cut(s)	348, 434, 516, 692
BccI	CCATC	3 cut(s)	224, 421, 623
BcnI	CCSGG	2 cut(s)	734, 735
BcoDI	GTCTC	2 cut(s)	406, 720
BfaI	CTAG	2 cut(s)	798, 845
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	4 cut(s)	337, 423, 530, 706
BlsI	GCNGC	4 cut(s)	338, 424, 531, 707
Bme1390I	CCNGG	2 cut(s)	734, 735
BmeT110I	CYCGRG	3 cut(s)	521, 723, 733
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	734, 735
BmsI	GCATC	2 cut(s)	22, 728
BpiI	GAAGAC	2 cut(s)	196, 705
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	2 cut(s)	734, 735
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	5 cut(s)	78, 89, 244, 382, 733
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 444
Bse1I	ACTGG	2 cut(s)	464, 852
Bse3DI	GCAATG	1 cut(s)	650
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	5 cut(s)	78, 89, 244, 382, 733
BseGI	GGATG	6 cut(s)	37, 235, 634, 679, 743, 829
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	178, 444
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	464, 852
BseXI	GCAGC	4 cut(s)	348, 434, 516, 692
BsgI	GTGCAG	1 cut(s)	417
BsiHKCI	CYCGRG	3 cut(s)	521, 723, 733
BsiSI	CCGG	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	178, 444
BsmAI	GTCTC	2 cut(s)	406, 720
BsoBI	CYCGRG	3 cut(s)	521, 723, 733
Bsp143I	GATC	2 cut(s)	325, 676
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	2 cut(s)	464, 852
BssECI	CCNNGG	5 cut(s)	78, 89, 244, 382, 733
BssMI	GATC	2 cut(s)	325, 676
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	3 cut(s)	78, 89, 382
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	6 cut(s)	37, 235, 634, 679, 743, 829
BstKTI	GATC	2 cut(s)	328, 679
BstMAI	GTCTC	2 cut(s)	406, 720
BstMBI	GATC	2 cut(s)	325, 676
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	732, 733
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	348, 434, 516, 692
BstV2I	GAAGAC	2 cut(s)	196, 705
BstXI	CCANNNNNNTGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	6 cut(s)	37, 235, 634, 679, 743, 829
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	1 cut(s)	180
Cfr9I	CCCGGG	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	4 cut(s)	217, 333, 548, 754
CviJI	RGCY	8 cut(s)	15, 77, 88, 178, 182, 353, 529, 851
CviKI_1	RGCY	8 cut(s)	15, 77, 88, 178, 182, 353, 529, 851
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	327, 678
DpnII	GATC	2 cut(s)	325, 676
Eco130I	CCWWGG	3 cut(s)	78, 89, 382
Eco88I	CYCGRG	3 cut(s)	521, 723, 733
EcoT14I	CCWWGG	3 cut(s)	78, 89, 382
ErhI	CCWWGG	3 cut(s)	78, 89, 382
FaeI	CATG	4 cut(s)	220, 336, 551, 757
FaiI	YATR	8 cut(s)	218, 241, 334, 363, 549, 590, 755, 880
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	4 cut(s)	216, 332, 547, 753
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	337, 423, 530, 706
FokI	GGATG	6 cut(s)	44, 242, 641, 686, 750, 836
Fsp4HI	GCNGC	4 cut(s)	337, 423, 530, 706
FspBI	CTAG	2 cut(s)	798, 845
GluI	GCNGC	4 cut(s)	337, 423, 530, 706
HapII	CCGG	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	220, 336, 551, 757
HinfI	GANTC	4 cut(s)	22, 307, 431, 515
HpaII	CCGG	1 cut(s)	734
Hpy166II	GTNNAC	2 cut(s)	109, 619
Hpy188I	TCNGA	3 cut(s)	248, 639, 667
Hpy188III	TCNNGA	4 cut(s)	197, 311, 595, 725
Hpy8I	GTNNAC	2 cut(s)	109, 619
Hpy99I	CGWCG	2 cut(s)	203, 307
HpyAV	CCTTC	2 cut(s)	484, 652
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	49, 201
HpyCH4V	TGCA	7 cut(s)	35, 212, 336, 398, 422, 566, 753
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	49, 201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	220, 336, 551, 757
Kzo9I	GATC	2 cut(s)	325, 676
LmnI	GCTCC	2 cut(s)	74, 526
LpnPI	CCDG	9 cut(s)	164, 206, 222, 243, 324, 396, 477, 747, 865
Lsp1109I	GCAGC	4 cut(s)	348, 434, 516, 692
LweI	GCATC	2 cut(s)	22, 728
MaeI	CTAG	2 cut(s)	798, 845
MaeII	ACGT	2 cut(s)	49, 201
MaeIII	GTNAC	2 cut(s)	45, 764
MalI	GATC	2 cut(s)	327, 678
MboI	GATC	2 cut(s)	325, 676
MboII	GAAGA	8 cut(s)	196, 426, 499, 508, 511, 514, 596, 710
MluCI	AATT	5 cut(s)	154, 166, 345, 748, 804
MmeI	TCCRAC	2 cut(s)	316, 606
MnlI	CCTC	4 cut(s)	63, 254, 340, 825
MseI	TTAA	4 cut(s)	191, 276, 348, 441
MslI	CAYNNNNRTG	2 cut(s)	61, 822
MspI	CCGG	1 cut(s)	734
MspR9I	CCNGG	2 cut(s)	734, 735
NciI	CCSGG	2 cut(s)	734, 735
NdeII	GATC	2 cut(s)	325, 676
NlaIII	CATG	4 cut(s)	220, 336, 551, 757
NlaIV	GGNNCC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	723
PfeI	GAWTC	4 cut(s)	22, 307, 431, 515
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	338, 424, 531, 707
PspN4I	GGNNCC	1 cut(s)	76
PsrI	GAACNNNNNNTAC	2 cut(s)	30, 62
PstI	CTGCAG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	61, 822
SaqAI	TTAA	4 cut(s)	191, 276, 348, 441
SatI	GCNGC	4 cut(s)	337, 423, 530, 706
Sau3AI	GATC	2 cut(s)	325, 676
ScrFI	CCNGG	2 cut(s)	734, 735
SetI	ASST	8 cut(s)	52, 139, 180, 204, 246, 355, 531, 618
SfaNI	GCATC	2 cut(s)	22, 728
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	723
SlaI	CTCGAG	1 cut(s)	723
SmaI	CCCGGG	1 cut(s)	735
SmiMI	CAYNNNNRTG	2 cut(s)	61, 822
SmlI	CTYRAG	2 cut(s)	593, 723
SmoI	CTYRAG	2 cut(s)	593, 723
Sse9I	AATT	5 cut(s)	154, 166, 345, 748, 804
SspI	AATATT	2 cut(s)	284, 684
SspMI	CTAG	2 cut(s)	798, 845
StyD4I	CCNGG	2 cut(s)	732, 733
StyI	CCWWGG	3 cut(s)	78, 89, 382
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	2 cut(s)	52, 204
TaqI	TCGA	7 cut(s)	25, 198, 305, 513, 540, 679, 724
TasI	AATT	5 cut(s)	154, 166, 345, 748, 804
TfiI	GAWTC	4 cut(s)	22, 307, 431, 515
Tru1I	TTAA	4 cut(s)	191, 276, 348, 441
Tru9I	TTAA	4 cut(s)	191, 276, 348, 441
TscAI	CASTG	1 cut(s)	859
TseI	GCWGC	4 cut(s)	336, 422, 529, 705
TspDTI	ATGAA	2 cut(s)	615, 671
TspGWI	ACGGA	1 cut(s)	277
TspMI	CCCGGG	1 cut(s)	733
TspRI	CASTG	1 cut(s)	859
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XhoI	CTCGAG	1 cut(s)	723
XmaI	CCCGGG	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	798, 845
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.