Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

9852545 .. 9853545

Gene Structure 1001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCCGCTCAATTATCCTACAGACTGTATTCTATCATGTTGTACGCTTAGAGCTTTCAGCACCATCGAGACTGTATTCTATCATGTTGTAACTCCGGCCAATGATGCCAACGAAGGGAAAAGGGGTTGGTTGATTAGATTAAGCAGAAACCCAAACGGAAACCCAAAATCAAAGTTGATTCCGGCATTACTTCCTCCATTTTCACTGTTCATCCTCTACTTGTATCAAGGCTCTTTCATGGTGCACCGGTCAGACCGGTCCTTATCCTCATTCCGAGCAAGGGGAATAAGCTTCTTGGACTTTGGCGTATCTGAATTAGCAAAACATCATCTCTTACTGTGTCATCAGAATAAGATTGTTACTAAGATGGCCGTGTCCTTGAATCTAGATTTCCCTGCTGTCATGACGTTGAGGTATGGAAGATTATACCATAATAAACTAAATATTGCGTCTCCAGTATTCCCTTTGGGTTTTGACAAGACGAAGAAGAAGAATTATTGGGTGCAATCATTGGGGGAGCTGCTTGTAGTTGAGAGAGATGGGAGTGCATTTGTGGGAAAAGGTGGCTGTGTAGACTATATGCTTAAGACTGAAGTTAAGTTCAGGGTTTCTAAGTTGGATGAAATTAGGAAGCAATGGGTTGAGATGGAAGCTTCGGATTTGAATGATCGAATCTCGTTTGTGGGGGAGGACTGCTGCTCCTCAGTTTCTACTCGAGACTTCCTGGATGCCAAGGAAGTTGCATTTATTTCTGTTATGAGCAGTATGATAAATGGGATGGTGATGATAACTGTAGTGGAATTGGAGTGTTCAACTTGGATGATGGAAGGGGGCTGCGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

281

Amino Acids

31.55

Weight (kDa)

8.52

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	148 - 241	5.3e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	839
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	2 cut(s)	96, 369
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	114, 280
AflII	CTTAAG	1 cut(s)	584
AgeI	ACCGGT	2 cut(s)	246, 255
AgsI	TTSAA	3 cut(s)	382, 664, 813
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	4 cut(s)	53, 291, 520, 653
AluI	AGCT	4 cut(s)	53, 291, 520, 653
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	62, 456, 711
Alw44I	GTGCAC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	2 cut(s)	96, 369
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	520, 696, 834
AsiGI	ACCGGT	2 cut(s)	246, 255
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	714
AvaII	GGWCC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	507, 683, 821
BccI	CCATC	6 cut(s)	71, 361, 533, 640, 772, 817
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	725
BcoDI	GTCTC	3 cut(s)	62, 456, 711
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	18, 792
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	4 cut(s)	5, 521, 697, 835
BlsI	GCNGC	4 cut(s)	6, 522, 698, 836
Bme1390I	CCNGG	1 cut(s)	725
Bme18I	GGWCC	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	725
BmsI	GCATC	2 cut(s)	94, 718
BpmI	CTGGAG	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	732
BsaWI	WCCGGW	2 cut(s)	246, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	683, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 280
Bse118I	RCCGGY	2 cut(s)	246, 255
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	5 cut(s)	210, 625, 733, 783, 825
BseLI	CCNNNNNNNGG	2 cut(s)	114, 280
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	691
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	507, 683, 821
Bsh1236I	CGCG	1 cut(s)	839
BshFI	GGCC	2 cut(s)	98, 371
BshTI	ACCGGT	2 cut(s)	246, 255
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	4 cut(s)	95, 182, 247, 256
BslI	CCNNNNNNNGG	2 cut(s)	114, 280
BsmAI	GTCTC	3 cut(s)	62, 456, 711
BsmBI	CGTCTC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	98, 371
BsoBI	CYCGRG	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	667
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	98, 371
BspCNI	CTCAG	1 cut(s)	716
BspFNI	CGCG	1 cut(s)	839
BspHI	TCATGA	1 cut(s)	402
BspTI	CTTAAG	1 cut(s)	584
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	641
BsrFI	RCCGGY	2 cut(s)	246, 255
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	2 cut(s)	246, 255
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	1 cut(s)	667
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	5 cut(s)	26, 73, 207, 339, 793
BstAFI	CTTAAG	1 cut(s)	584
BstDEI	CTNAG	4 cut(s)	47, 363, 612, 703
BstF5I	GGATG	5 cut(s)	210, 625, 733, 783, 825
BstFNI	CGCG	1 cut(s)	839
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	1 cut(s)	670
BstMAI	GTCTC	3 cut(s)	62, 456, 711
BstMBI	GATC	1 cut(s)	667
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	723
BstSFI	CTRYAG	2 cut(s)	18, 792
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	839
BstV1I	GCAGC	3 cut(s)	507, 683, 821
BsuRI	GGCC	2 cut(s)	98, 371
BtsCI	GGATG	5 cut(s)	210, 625, 733, 783, 825
BtsIMutI	CAGTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	1 cut(s)	839
Cfr10I	RCCGGY	2 cut(s)	246, 255
Cfr13I	GGNCC	1 cut(s)	258
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	42
CspAI	ACCGGT	2 cut(s)	246, 255
CviAII	CATG	4 cut(s)	36, 83, 238, 403
CviJI	RGCY	9 cut(s)	53, 98, 231, 291, 371, 520, 567, 653, 834
CviKI_1	RGCY	9 cut(s)	53, 98, 231, 291, 371, 520, 567, 653, 834
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	4 cut(s)	47, 363, 612, 703
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
EaeI	YGGCCR	2 cut(s)	96, 369
Eco130I	CCWWGG	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	4 cut(s)	39, 86, 241, 406
FatI	CATG	4 cut(s)	35, 82, 237, 402
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	5, 521, 697, 835
FokI	GGATG	5 cut(s)	197, 632, 740, 790, 832
Fsp4HI	GCNGC	4 cut(s)	5, 521, 697, 835
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	4 cut(s)	5, 521, 697, 835
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	2 cut(s)	98, 371
HapII	CCGG	4 cut(s)	95, 182, 247, 256
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	839
Hin1II	CATG	4 cut(s)	39, 86, 241, 406
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HindIII	AAGCTT	2 cut(s)	289, 651
HinfI	GANTC	3 cut(s)	178, 382, 672
HpaII	CCGG	4 cut(s)	95, 182, 247, 256
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	2 cut(s)	244, 574
Hpy188I	TCNGA	5 cut(s)	253, 275, 313, 348, 658
Hpy188III	TCNNGA	4 cut(s)	67, 386, 403, 716
Hpy8I	GTNNAC	2 cut(s)	244, 574
HpyAV	CCTTC	2 cut(s)	107, 821
HpyCH4III	ACNGT	5 cut(s)	26, 73, 207, 339, 793
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	244, 505, 548, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	4 cut(s)	47, 363, 612, 703
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	39, 86, 241, 406
HspAI	GCGC	1 cut(s)	837
Kzo9I	GATC	1 cut(s)	667
LmnI	GCTCC	2 cut(s)	517, 704
LpnPI	CCDG	9 cut(s)	108, 195, 260, 269, 408, 468, 589, 710, 737
Lsp1109I	GCAGC	3 cut(s)	507, 683, 821
LweI	GCATC	2 cut(s)	94, 718
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	88, 358
MalI	GATC	1 cut(s)	669
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	1 cut(s)	667
MboII	GAAGA	4 cut(s)	432, 496, 499, 502
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	5 cut(s)	10, 314, 493, 624, 800
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	6 cut(s)	204, 224, 277, 405, 682, 712
MseI	TTAA	3 cut(s)	140, 585, 597
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	4 cut(s)	95, 182, 247, 256
MspR9I	CCNGG	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	725
MvnI	CGCG	1 cut(s)	839
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	1 cut(s)	667
NlaIII	CATG	4 cut(s)	39, 86, 241, 406
PaeR7I	CTCGAG	1 cut(s)	714
PagI	TCATGA	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	178, 382, 672
PfoI	TCCNGGA	1 cut(s)	723
PinAI	ACCGGT	2 cut(s)	246, 255
PkrI	GCNGC	4 cut(s)	6, 522, 698, 836
Psp6I	CCWGG	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	723
PspPI	GGNCC	1 cut(s)	258
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	140, 585, 597
SatI	GCNGC	4 cut(s)	5, 521, 697, 835
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	725
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	55, 293, 410, 416, 522, 565, 655
SfaNI	GCATC	2 cut(s)	94, 718
SfcI	CTRYAG	2 cut(s)	18, 792
Sfr274I	CTCGAG	1 cut(s)	714
SinI	GGWCC	1 cut(s)	258
SlaI	CTCGAG	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	584, 714
SmoI	CTYRAG	2 cut(s)	584, 714
Sse9I	AATT	5 cut(s)	10, 314, 493, 624, 800
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	5 cut(s)	26, 73, 207, 339, 793
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	3 cut(s)	66, 670, 715
TasI	AATT	5 cut(s)	10, 314, 493, 624, 800
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	178, 382, 672
Tru1I	TTAA	3 cut(s)	140, 585, 597
Tru9I	TTAA	3 cut(s)	140, 585, 597
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	3 cut(s)	520, 696, 834
TspDTI	ATGAA	3 cut(s)	199, 226, 636
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	210
Vha464I	CTTAAG	1 cut(s)	584
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	258
XbaI	TCTAGA	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	714
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.