Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

10256351 .. 10258772

Gene Structure 2422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G010130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCCGTGTCCGAGAACCTTGATGTCCCTGCGGTCATGATGTTGAGGGATAAAATACTGTATGGTGGAAAACTAGGTCTTCACGTCAGAGATGCAACCAAGCTCTACCTAAATCCGGATTATCCTGATGGTGTTGCCTTGAATAGAAAGACAAAGACTCCGGTTGATGATGTTATTTTTTATCAAGGAAAGTTTTATGCTGTCTCAGAGACTGAGGGAGCTATAGTGATGGATTCTTCATGTAATTTTAAAGTGGTATACGTAGCGTGGCCAATATGTAATTTCATCAGTTGTGACAAGAAGATTTATTTGGTGGAATCACTCGGGGAGTTGTTGTTAGTTGAGAGATTAGGGCCTAGATTCATCGTGTTGGAAGTTATATTCATGGTTTACAAGTTGGAAGAAAGGGAGGGATGGGTGGAGATGAAAGCTTCAGAATTAAGTGATCGAATATTGTTTGTGGCTGATGGTCTCTTTAGCTTCTCTGTTTCTGCTAAAGAGTTCCCAGGATGCCGAGGGAGTTGCATTTATTTCTCTTATGAACGTCGAGTTGCAAGGGGTACTCCTAAAAGTATCTCTAGTCAGATTGGAGTGTTCAACTTATATACGCAAAGGGCATCGCAATTAGGATCTTATCCAGCCAGTGCTAATATCTTTTTGCCACCCCCGACTTGGCCTAGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

228

Amino Acids

25.68

Weight (kDa)

7.55

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	53 - 200	8.2e-26	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	2 cut(s)	3, 269
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	115, 672
AgsI	TTSAA	2 cut(s)	142, 598
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	4 cut(s)	103, 221, 431, 480
AluI	AGCT	4 cut(s)	103, 221, 431, 480
Alw26I	GTCTC	3 cut(s)	203, 208, 476
AlwI	GGATC	1 cut(s)	637
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	5 cut(s)	3, 269, 353, 674, 680
AspA2I	CCTAGG	1 cut(s)	677
AspS9I	GGNCC	2 cut(s)	353, 681
AvaI	CYCGRG	1 cut(s)	323
AvrII	CCTAGG	1 cut(s)	677
BalI	TGGCCA	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	71
BccI	CCATC	4 cut(s)	122, 223, 408, 461
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	203, 208, 476
BfaI	CTAG	4 cut(s)	74, 357, 579, 678
BfmI	CTRYAG	1 cut(s)	222
BlnI	CCTAGG	1 cut(s)	677
Bme1390I	CCNGG	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	353, 681
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	82, 500, 626
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	505, 514, 677
BsaWI	WCCGGW	2 cut(s)	115, 160
BsaXI	ACNNNNNCTCC	6 cut(s)	142, 172, 210, 240, 320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 672
Bse1I	ACTGG	1 cut(s)	642
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	505, 514, 677
BseGI	GGATG	2 cut(s)	419, 515
BseLI	CCNNNNNNNGG	2 cut(s)	115, 672
BseMII	CTCAG	2 cut(s)	204, 219
BseNI	ACTGG	1 cut(s)	642
BshFI	GGCC	5 cut(s)	5, 271, 355, 676, 682
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	116, 161
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	115, 672
BsmAI	GTCTC	3 cut(s)	203, 208, 476
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	5 cut(s)	5, 271, 355, 676, 682
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	445, 629
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	5 cut(s)	5, 271, 355, 676, 682
BspCNI	CTCAG	2 cut(s)	205, 218
BspEI	TCCGGA	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	36
BspPI	GGATC	1 cut(s)	637
BspTNI	GGTCTC	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	3 cut(s)	505, 514, 677
BssMI	GATC	2 cut(s)	445, 629
BssNAI	GTATAC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	677
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	205, 213
BstF5I	GGATG	2 cut(s)	419, 515
BstKTI	GATC	2 cut(s)	448, 632
BstMAI	GTCTC	3 cut(s)	203, 208, 476
BstMBI	GATC	2 cut(s)	445, 629
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	222
BstSNI	TACGTA	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
BstZ17I	GTATAC	1 cut(s)	259
BsuRI	GGCC	5 cut(s)	5, 271, 355, 676, 682
BtgZI	GCGATG	1 cut(s)	603
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	419, 515
BtsIMutI	CAGTG	1 cut(s)	649
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	353, 681
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	3 cut(s)	37, 240, 385
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	205, 213
DpnI	GATC	2 cut(s)	447, 631
DpnII	GATC	2 cut(s)	445, 629
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	3, 269
Eco105I	TACGTA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	677
Eco31I	GGTCTC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	323
EcoO109I	RGGNCCY	2 cut(s)	353, 681
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	677
ErhI	CCWWGG	1 cut(s)	677
FaeI	CATG	3 cut(s)	40, 243, 388
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	3 cut(s)	36, 239, 384
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	2 cut(s)	426, 522
FspBI	CTAG	4 cut(s)	74, 357, 579, 678
HaeIII	GGCC	5 cut(s)	5, 271, 355, 676, 682
HapII	CCGG	2 cut(s)	116, 161
Hin1II	CATG	3 cut(s)	40, 243, 388
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	4 cut(s)	157, 233, 317, 360
HpaII	CCGG	2 cut(s)	116, 161
Hpy166II	GTNNAC	2 cut(s)	259, 391
Hpy188I	TCNGA	5 cut(s)	13, 89, 208, 436, 585
Hpy188III	TCNNGA	3 cut(s)	37, 116, 125
Hpy8I	GTNNAC	2 cut(s)	259, 391
Hpy99I	CGWCG	1 cut(s)	549
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	3 cut(s)	84, 261, 544
HpyCH4V	TGCA	3 cut(s)	95, 525, 554
HpyF3I	CTNAG	2 cut(s)	205, 213
HpySE526I	ACGT	3 cut(s)	84, 261, 544
Hsp92II	CATG	3 cut(s)	40, 243, 388
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	445, 629
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	8 cut(s)	42, 129, 138, 174, 492, 519, 651, 655
LweI	GCATC	3 cut(s)	82, 500, 626
MaeI	CTAG	4 cut(s)	74, 357, 579, 678
MaeII	ACGT	3 cut(s)	84, 261, 544
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	447, 631
MboI	GATC	2 cut(s)	445, 629
MboII	GAAGA	4 cut(s)	71, 228, 313, 413
MflI	RGATCY	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	4 cut(s)	244, 280, 437, 623
MluNI	TGGCCA	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	351, 378
MnlI	CCTC	4 cut(s)	39, 208, 403, 509
Mox20I	TGGCCA	1 cut(s)	271
MroI	TCCGGA	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	2 cut(s)	249, 440
Msp20I	TGGCCA	1 cut(s)	271
MspI	CCGG	2 cut(s)	116, 161
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
NdeII	GATC	2 cut(s)	445, 629
NlaIII	CATG	3 cut(s)	40, 243, 388
NmeAIII	GCCGAG	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	233, 317, 360
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspPI	GGNCC	2 cut(s)	353, 681
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	629
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	249, 440
Sau3AI	GATC	2 cut(s)	445, 629
Sau96I	GGNCC	2 cut(s)	353, 681
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	82, 500, 626
SfcI	CTRYAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	262
Sse9I	AATT	4 cut(s)	244, 280, 437, 623
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	4 cut(s)	74, 357, 579, 678
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	677
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	3 cut(s)	87, 264, 547
TaqI	TCGA	2 cut(s)	448, 547
TasI	AATT	4 cut(s)	244, 280, 437, 623
TfiI	GAWTC	3 cut(s)	233, 317, 360
Tru1I	TTAA	2 cut(s)	249, 440
Tru9I	TTAA	2 cut(s)	249, 440
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	6 cut(s)	228, 274, 352, 373, 440, 555
TspRI	CASTG	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
XmaJI	CCTAGG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	4 cut(s)	74, 357, 579, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.