Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

59270010 .. 59271212

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCCGAGAGACAGCTCCTAGAAGAATTGATAGAGAAGATCCAAACACACCTTGACATCAAGAACGATGTCCATGTCAAGCAATTCCGTGCCGTCTGTCAATCATGGCAGTCTTCTATTCCTAAGCCCCTCAAGCCACTGCCTCAAGTTCCTCAGTTCCCCCAGAGTTTTCTCTTCAACAGACGGACGTCTAGATCTTTCTACAGAGAGTTTTCACATGTCCACACCTCCATCGGGAGTGTAGTCTATCATATTGCACCTACCCACCGGACCGCCGCCGGTGAAAGGGAAAGGGGTTGGTTGATTAGAGTGAGTAGAAACAATCAAGGACAACCAAGCTTACTTCCTGCATTACTTCCTCCATTATCAAGGCTCAGTAACTACAGTGACTTATGCATGATGAAGTGGCAAAAGTTAGACAGATCATTCTACTCATTCCGGCCAAAGGCAATAAACTTAATGGAATTTGGCGTATTTGAATTGGGACAACATTATCTCTTGACATGTAAATTCGATCAGAGTTTTAGCAAGTTGGTTGTATCAACGGATCTAGGTTTCCCTGCGGTCATGTCGGTGAGGGATGGAACATTATACCTTGGAACATTAGGTGGACCAAAATATTGTATCATGATTCCGGTGAAGAATAAAAATGAAGTTTTTGATGTTGTTATTTTCTACCAAGGAAACTTCTGTGCTGTCTCTAAGTATGGGAAAGCTCTAGTGCTGGATTCTTCCACCAAGTACCGGACAGAGATTGCATCTCCAATATCTTCAAGTAGAGACAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAATAAGAAGAATTACTTGGTGGAATCTTTAGGGCAGGTTCTTTTAGTCGAGAGACATGGGTCTTCATTTGTTGGAAAAGGTGGTTCTATAGACAATATGCTCAAGACTGGGGTTAAGTTCAAGGTGTATAAGTTGGATGAAATTAGGAAGCAATGGATCGAGATGGAAGCTTTGGATTTGAATGATCGAATATTGTTTGTGGGAGAAGACAGCTGCTTCGCACTTTCTACTCAAGATTTCCCTGGATGTCTAGGGTGTTGCATTTATTTCTGTTTTGAGTATGATGAATGGGATTGTGGTATCACTAGTGGAATTGGAGTGTTCATCTTAGATAGTGGAAGGGGGTATCACCTTGAATATCTTCCACGCATGCAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

401

Amino Acids

45.84

Weight (kDa)

9.36

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	119 - 382	2.2e-26	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	847
AciI	CCGC	3 cut(s)	273, 276, 563
AclWI	GGATC	3 cut(s)	34, 555, 986
AcoI	YGGCCR	2 cut(s)	3, 440
AcsI	RAATTY	2 cut(s)	464, 509
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	4 cut(s)	234, 285, 445, 744
AflIII	ACRYGT	2 cut(s)	217, 503
AgsI	TTSAA	6 cut(s)	178, 479, 774, 943, 1003, 1178
AhlI	ACTAGT	1 cut(s)	1127
AjnI	CCWGG	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AluBI	AGCT	5 cut(s)	16, 339, 716, 992, 1035
AluI	AGCT	5 cut(s)	16, 339, 716, 992, 1035
Alw26I	GTCTC	4 cut(s)	4, 703, 774, 868
AlwI	GGATC	3 cut(s)	34, 555, 986
AoxI	GGCC	2 cut(s)	3, 440
ApeKI	GCWGC	1 cut(s)	1035
ApoI	RAATTY	2 cut(s)	464, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	1022, 1054
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspS9I	GGNCC	2 cut(s)	270, 611
AsuHPI	GGTGA	4 cut(s)	293, 586, 649, 1163
AvaII	GGWCC	2 cut(s)	270, 611
BbsI	GAAGAC	3 cut(s)	105, 876, 1035
BbvI	GCAGC	1 cut(s)	1022
BccI	CCATC	3 cut(s)	239, 575, 979
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	1065
BcoDI	GTCTC	4 cut(s)	4, 703, 774, 868
BcuI	ACTAGT	1 cut(s)	1127
BfaI	CTAG	6 cut(s)	20, 192, 551, 719, 1073, 1128
BfmI	CTRYAG	3 cut(s)	202, 382, 909
BfuAI	ACCTGC	1 cut(s)	847
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	2 cut(s)	276, 1036
BlsI	GCNGC	2 cut(s)	277, 1037
Bme1390I	CCNGG	1 cut(s)	1065
Bme18I	GGWCC	2 cut(s)	270, 611
BmgT120I	GGNCC	2 cut(s)	270, 611
BmrFI	CCNGG	1 cut(s)	1065
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	1 cut(s)	767
BmuI	ACTGGG	1 cut(s)	939
BoxI	GACNNNNGTC	2 cut(s)	187, 880
BpiI	GAAGAC	3 cut(s)	105, 876, 1035
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	116, 129, 908, 1038
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	595, 679, 1063
BsaWI	WCCGGW	3 cut(s)	267, 634, 744
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 285, 445, 744
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	934
Bse3DI	GCAATG	1 cut(s)	980
BseBI	CCWGG	1 cut(s)	1065
BseDI	CCNNGG	3 cut(s)	595, 679, 1063
BseGI	GGATG	3 cut(s)	586, 964, 1073
BseLI	CCNNNNNNNGG	4 cut(s)	234, 285, 445, 744
BseMI	GCAATG	1 cut(s)	980
BseMII	CTCAG	2 cut(s)	167, 388
BseNI	ACTGG	1 cut(s)	934
BseXI	GCAGC	1 cut(s)	1022
BshFI	GGCC	2 cut(s)	5, 442
BsiSI	CCGG	5 cut(s)	268, 279, 439, 635, 745
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	4 cut(s)	234, 285, 445, 744
BsmAI	GTCTC	4 cut(s)	4, 703, 774, 868
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	5, 442
Bsp143I	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
BspACI	CCGC	3 cut(s)	273, 276, 563
BspANI	GGCC	2 cut(s)	5, 442
BspCNI	CTCAG	2 cut(s)	166, 387
BspHI	TCATGA	1 cut(s)	627
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	3 cut(s)	34, 555, 986
BsrDI	GCAATG	1 cut(s)	980
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	934
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	595, 679, 1063
BssMI	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	2 cut(s)	595, 679
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	1197
BstC8I	GCNNGC	1 cut(s)	1193
BstDEI	CTNAG	5 cut(s)	123, 153, 374, 702, 1150
BstF5I	GGATG	3 cut(s)	586, 964, 1073
BstKTI	GATC	7 cut(s)	42, 197, 425, 517, 550, 981, 1009
BstMAI	GTCTC	4 cut(s)	4, 703, 774, 868
BstMBI	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 1197
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	3 cut(s)	221, 507, 1195
BstPAI	GACNNNNGTC	2 cut(s)	187, 880
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	3 cut(s)	202, 382, 909
BstV1I	GCAGC	1 cut(s)	1022
BstV2I	GAAGAC	3 cut(s)	105, 876, 1035
BstX2I	RGATCY	3 cut(s)	39, 194, 547
BstYI	RGATCY	3 cut(s)	39, 194, 547
BsuRI	GGCC	2 cut(s)	5, 442
BtsCI	GGATG	3 cut(s)	586, 964, 1073
BtsI	GCAGTG	2 cut(s)	137, 1202
BtsIMutI	CAGTG	3 cut(s)	137, 391, 1202
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	1 cut(s)	1193
CciI	TCATGA	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	270, 611
CpoI	CGGWCCG	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	742
CspI	CGGWCCG	1 cut(s)	270
CviAII	CATG	9 cut(s)	74, 105, 218, 397, 504, 568, 628, 878, 1192
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	5 cut(s)	123, 153, 374, 702, 1150
DpnI	GATC	7 cut(s)	41, 196, 424, 516, 549, 980, 1008
DpnII	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
EaeI	YGGCCR	2 cut(s)	3, 440
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	595, 679
Eco47I	GGWCC	2 cut(s)	270, 611
EcoRII	CCWGG	1 cut(s)	1063
EcoT14I	CCWWGG	2 cut(s)	595, 679
EcoT22I	ATGCAT	1 cut(s)	398
ErhI	CCWWGG	2 cut(s)	595, 679
FaeI	CATG	9 cut(s)	77, 108, 221, 400, 507, 571, 631, 881, 1195
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	9 cut(s)	73, 104, 217, 396, 503, 567, 627, 877, 1191
Fnu4HI	GCNGC	2 cut(s)	276, 1036
FokI	GGATG	3 cut(s)	593, 971, 1080
Fsp4HI	GCNGC	2 cut(s)	276, 1036
FspBI	CTAG	6 cut(s)	20, 192, 551, 719, 1073, 1128
GluI	GCNGC	2 cut(s)	276, 1036
HaeIII	GGCC	2 cut(s)	5, 442
HapII	CCGG	5 cut(s)	268, 279, 439, 635, 745
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	9 cut(s)	77, 108, 221, 400, 507, 571, 631, 881, 1195
HindIII	AAGCTT	2 cut(s)	337, 990
HinfI	GANTC	3 cut(s)	631, 728, 845
HpaII	CCGG	5 cut(s)	268, 279, 439, 635, 745
HphI	GGTGA	4 cut(s)	293, 586, 649, 1163
Hpy166II	GTNNAC	2 cut(s)	223, 611
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	9 cut(s)	61, 192, 235, 499, 628, 871, 925, 982, 1055
Hpy8I	GTNNAC	2 cut(s)	223, 611
HpyAV	CCTTC	1 cut(s)	1155
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	6 cut(s)	257, 350, 396, 758, 1083, 1195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 1197
HpyF3I	CTNAG	5 cut(s)	123, 153, 374, 702, 1150
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	9 cut(s)	77, 108, 221, 400, 507, 571, 631, 881, 1195
Kzo9I	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	1022
LweI	GCATC	1 cut(s)	767
MaeI	CTAG	6 cut(s)	20, 192, 551, 719, 1073, 1128
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	377, 386
MalI	GATC	7 cut(s)	41, 196, 424, 516, 549, 980, 1008
MboI	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
MflI	RGATCY	3 cut(s)	39, 194, 547
MluCI	AATT	8 cut(s)	26, 83, 464, 479, 509, 832, 963, 1134
MmeI	TCCRAC	2 cut(s)	874, 936
MnlI	CCTC	6 cut(s)	140, 153, 162, 238, 369, 570
Mph1103I	ATGCAT	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	1182
MseI	TTAA	2 cut(s)	458, 936
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	1035
MspI	CCGG	5 cut(s)	268, 279, 439, 635, 745
MspR9I	CCNGG	1 cut(s)	1065
MvaI	CCWGG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	2 cut(s)	133, 1197
NdeII	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
NlaIII	CATG	9 cut(s)	77, 108, 221, 400, 507, 571, 631, 881, 1195
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	3 cut(s)	221, 507, 1195
PaeI	GCATGC	1 cut(s)	1195
PagI	TCATGA	1 cut(s)	627
PciI	ACATGT	2 cut(s)	217, 503
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	3 cut(s)	631, 728, 845
PkrI	GCNGC	2 cut(s)	277, 1037
PscI	ACATGT	2 cut(s)	217, 503
PshAI	GACNNNNGTC	2 cut(s)	187, 880
Psp6I	CCWGG	1 cut(s)	1063
PspGI	CCWGG	1 cut(s)	1063
PspPI	GGNCC	2 cut(s)	270, 611
PsuI	RGATCY	3 cut(s)	39, 194, 547
PvuII	CAGCTG	1 cut(s)	1035
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
RseI	CAYNNNNRTG	1 cut(s)	572
Rsr2I	CGGWCCG	1 cut(s)	270
RsrII	CGGWCCG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	458, 936
SatI	GCNGC	2 cut(s)	276, 1036
Sau3AI	GATC	7 cut(s)	39, 194, 422, 514, 547, 978, 1006
Sau96I	GGNCC	2 cut(s)	270, 611
ScrFI	CCNGG	1 cut(s)	1065
SfaNI	GCATC	1 cut(s)	767
SfcI	CTRYAG	3 cut(s)	202, 382, 909
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	270, 611
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	4 cut(s)	131, 144, 923, 1053
SmoI	CTYRAG	4 cut(s)	131, 144, 923, 1053
SpeI	ACTAGT	1 cut(s)	1127
SphI	GCATGC	1 cut(s)	1195
Sse9I	AATT	8 cut(s)	26, 83, 464, 479, 509, 832, 963, 1134
SsiI	CCGC	3 cut(s)	273, 276, 563
SspI	AATATT	2 cut(s)	620, 1014
SspMI	CTAG	6 cut(s)	20, 192, 551, 719, 1073, 1128
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	2 cut(s)	595, 679
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	4 cut(s)	513, 870, 981, 1009
TasI	AATT	8 cut(s)	26, 83, 464, 479, 509, 832, 963, 1134
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	631, 728, 845
Tru1I	TTAA	2 cut(s)	458, 936
Tru9I	TTAA	2 cut(s)	458, 936
TscAI	CASTG	3 cut(s)	144, 391, 1202
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	1 cut(s)	1035
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	6 cut(s)	416, 666, 876, 975, 1122, 1135
TspGWI	ACGGA	3 cut(s)	77, 199, 560
TspRI	CASTG	3 cut(s)	144, 391, 1202
VpaK11BI	GGWCC	2 cut(s)	270, 611
XapI	RAATTY	2 cut(s)	464, 509
XbaI	TCTAGA	1 cut(s)	191
XceI	RCATGY	3 cut(s)	221, 507, 1195
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	6 cut(s)	20, 192, 551, 719, 1073, 1128
ZraI	GACGTC	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.