Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9657440 .. 9658790

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG114000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGGATAGAGATCTCCCAGACGAGCTGATAGAGATGATCAGAAAGCACCTTGACCTTGGAACCAACATCTATGTTACTCAGTTCCGTGCCGTCTGTCAATATTGGCGATCTTCTATCCCTTCACTCAATCCACGCGAGCCACCACCTCAAGACCCTCTATTACCCTCTAGATTTTACATAAGGTCTGGATCTTTTACCACCATCAAGCGTAGCGTAGTCTATCATATTGCACCTTCTACTCATGACAATGATGCTAATGAAAGGAAACGGGGCTGGTTGATTCGATTGGATGCAGAACAAAAGTTACGTCCTCCATTATCGTGGAGTAATGGAGCTTTGGAAAAGCCAAGGGTAATAAACACAGTAGACTTTGGCGTACTTGAAGTGGCAAAACCTTATCTCTTGGCAAGTAATTACGACAAGAATTACCACAAGCTGGCTGTTTCCTTAAATCTCGACGTCTTCCCTGCAGTCATGCTGGTTAGGGATGGAGTTTTATACCTCGGAAAGTGGTCTGGTGGTGGTGTTGAAGTTAAAGAATATTCCGTCCAACTCTCCCCGTCGAATCCTGATGATGATGATGATCCCTCATGCAGCAAAACAATTAAAGCTAATGATTATGATGGTGTTATTTTTTATCAAGGAAAGTTTTGTGCAGTCTCTCAGTCTGGGAAACTTGCAGCGATGGATTCTTCCTTTAAGTGGAAAGTGATTGCGTTTCCAGTATCTACTTCAATGTGGTGGAAGAAGGAGAAGAAGAAGAACTTGGTCGAATCTCTCGGGGAGCTGCTTTTAGTCGAAAGACATGGTTCTACTTTTGTTGCAAAACATTGTTCTGTGGAAGATATGCTCAAGAATGAAGTCAAGTTCAAGGTTCACAAGTTGGATGGAGTTCGGAAGCAATGGGTTGAGATGAAGGGTTCGGATTTGGATGATCGAATATTGTTTGTGGGGGAAGACTGCTGCTTTTCAGTCTCTACTCGAGACTTCCCGGGATGCCAAGGGAATTGCATATATTTTTCTTATGAAGTTTGGTGCGGTAAGAATGTCATCTCTAGTAGAATTGGAGTGTTCAACTTGGATGTTGGGAGGGCGTCGCCACTAGAAGCCAGTGCTAACATCTTTCTGCCACCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

380

Amino Acids

42.94

Weight (kDa)

7.98

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	90 - 360	1.9e-30	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	5, 1041
AclWI	GGATC	2 cut(s)	199, 581
AcyI	GRCGYC	2 cut(s)	462, 1097
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	439, 705
AgsI	TTSAA	5 cut(s)	386, 533, 738, 874, 1078
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	5 cut(s)	28, 338, 439, 614, 790
AluI	AGCT	5 cut(s)	28, 338, 439, 614, 790
Alw26I	GTCTC	3 cut(s)	667, 981, 982
AlwI	GGATC	2 cut(s)	199, 581
Ama87I	CYCGRG	3 cut(s)	782, 984, 994
ApeKI	GCWGC	4 cut(s)	597, 683, 790, 966
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AsuC2I	CCSGG	2 cut(s)	995, 996
AvaI	CYCGRG	3 cut(s)	782, 984, 994
BbsI	GAAGAC	2 cut(s)	457, 966
BbvI	GCAGC	4 cut(s)	609, 695, 777, 953
BccI	CCATC	5 cut(s)	212, 485, 620, 682, 884
BceAI	ACGGC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	2 cut(s)	995, 996
BcoDI	GTCTC	3 cut(s)	667, 981, 982
BfaI	CTAG	3 cut(s)	171, 1059, 1106
BfmI	CTRYAG	1 cut(s)	471
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	4 cut(s)	598, 684, 791, 967
BlsI	GCNGC	4 cut(s)	599, 685, 792, 968
Bme1390I	CCNGG	2 cut(s)	995, 996
BmeT110I	CYCGRG	3 cut(s)	782, 984, 994
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	995, 996
BmsI	GCATC	3 cut(s)	244, 283, 989
BpiI	GAAGAC	2 cut(s)	457, 966
BpuEI	CTTGAG	2 cut(s)	135, 839
BpuMI	CCSGG	2 cut(s)	995, 996
BsaBI	GATNNNNATC	2 cut(s)	12, 585
BsaHI	GRCGYC	2 cut(s)	462, 1097
BsaJI	CCNNGG	5 cut(s)	58, 350, 505, 994, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 705
Bse1I	ACTGG	2 cut(s)	725, 1113
Bse3DI	GCAATG	1 cut(s)	911
Bse8I	GATNNNNATC	2 cut(s)	12, 585
BseDI	CCNNGG	5 cut(s)	58, 350, 505, 994, 1003
BseGI	GGATG	6 cut(s)	298, 496, 895, 940, 1004, 1090
BseJI	GATNNNNATC	2 cut(s)	12, 585
BseLI	CCNNNNNNNGG	2 cut(s)	439, 705
BseMI	GCAATG	1 cut(s)	911
BseMII	CTCAG	2 cut(s)	95, 680
BseNI	ACTGG	2 cut(s)	725, 1113
BseXI	GCAGC	4 cut(s)	609, 695, 777, 953
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	138
BsiHKCI	CYCGRG	3 cut(s)	782, 984, 994
BsiSI	CCGG	1 cut(s)	995
BslI	CCNNNNNNNGG	2 cut(s)	439, 705
BsmAI	GTCTC	3 cut(s)	667, 981, 982
BsoBI	CYCGRG	3 cut(s)	782, 984, 994
Bsp143I	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
BspACI	CCGC	2 cut(s)	5, 1041
BspCNI	CTCAG	2 cut(s)	94, 679
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	199, 581
BsrDI	GCAATG	1 cut(s)	911
BsrI	ACTGG	2 cut(s)	725, 1113
BssECI	CCNNGG	5 cut(s)	58, 350, 505, 994, 1003
BssMI	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
BssNI	GRCGYC	2 cut(s)	462, 1097
BssT1I	CCWWGG	3 cut(s)	58, 350, 1003
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	2 cut(s)	462, 1097
BstC8I	GCNNGC	2 cut(s)	140, 441
BstDEI	CTNAG	2 cut(s)	81, 666
BstF5I	GGATG	6 cut(s)	298, 496, 895, 940, 1004, 1090
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	6 cut(s)	16, 42, 113, 194, 589, 940
BstMAI	GTCTC	3 cut(s)	667, 981, 982
BstMBI	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
BstSCI	CCNGG	2 cut(s)	993, 994
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	4 cut(s)	609, 695, 777, 953
BstV2I	GAAGAC	2 cut(s)	457, 966
BstX2I	RGATCY	2 cut(s)	13, 191
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	2 cut(s)	13, 191
BtgZI	GCGATG	1 cut(s)	701
BtsCI	GGATG	6 cut(s)	298, 496, 895, 940, 1004, 1090
BtsIMutI	CAGTG	1 cut(s)	1120
Cac8I	GCNNGC	2 cut(s)	140, 441
CciI	TCATGA	1 cut(s)	244
Cfr9I	CCCGGG	1 cut(s)	994
CseI	GACGC	1 cut(s)	1086
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	4 cut(s)	245, 478, 594, 809
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	2 cut(s)	81, 666
DpnI	GATC	6 cut(s)	15, 41, 112, 193, 588, 939
DpnII	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	58, 350, 1003
Eco88I	CYCGRG	3 cut(s)	782, 984, 994
EcoT14I	CCWWGG	3 cut(s)	58, 350, 1003
ErhI	CCWWGG	3 cut(s)	58, 350, 1003
FaeI	CATG	4 cut(s)	248, 481, 597, 812
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FatI	CATG	4 cut(s)	244, 477, 593, 808
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	4 cut(s)	598, 684, 791, 967
FokI	GGATG	6 cut(s)	305, 503, 902, 947, 1011, 1097
Fsp4HI	GCNGC	4 cut(s)	598, 684, 791, 967
FspBI	CTAG	3 cut(s)	171, 1059, 1106
GluI	GCNGC	4 cut(s)	598, 684, 791, 967
HapII	CCGG	1 cut(s)	995
HgaI	GACGC	1 cut(s)	1086
Hin1I	GRCGYC	2 cut(s)	462, 1097
Hin1II	CATG	4 cut(s)	248, 481, 597, 812
HinfI	GANTC	4 cut(s)	283, 568, 692, 776
HpaII	CCGG	1 cut(s)	995
Hpy166II	GTNNAC	2 cut(s)	370, 880
Hpy188I	TCNGA	4 cut(s)	44, 509, 900, 928
Hpy188III	TCNNGA	8 cut(s)	152, 171, 189, 245, 458, 572, 856, 986
Hpy8I	GTNNAC	2 cut(s)	370, 880
Hpy99I	CGWCG	3 cut(s)	464, 568, 1102
HpyAV	CCTTC	4 cut(s)	132, 246, 745, 913
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	310, 462
HpyCH4V	TGCA	8 cut(s)	233, 296, 473, 597, 659, 683, 827, 1014
HpyF3I	CTNAG	2 cut(s)	81, 666
HpySE526I	ACGT	2 cut(s)	310, 462
Hsp92I	GRCGYC	2 cut(s)	462, 1097
Hsp92II	CATG	4 cut(s)	248, 481, 597, 812
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
LmnI	GCTCC	2 cut(s)	335, 787
Lsp1109I	GCAGC	4 cut(s)	609, 695, 777, 953
LweI	GCATC	3 cut(s)	244, 283, 989
MaeI	CTAG	3 cut(s)	171, 1059, 1106
MaeII	ACGT	2 cut(s)	310, 462
MaeIII	GTNAC	2 cut(s)	76, 306
MalI	GATC	6 cut(s)	15, 41, 112, 193, 588, 939
MboI	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
MboII	GAAGA	9 cut(s)	105, 457, 687, 760, 769, 772, 775, 857, 971
MflI	RGATCY	2 cut(s)	13, 191
MluCI	AATT	5 cut(s)	415, 427, 606, 1009, 1065
MmeI	TCCRAC	2 cut(s)	577, 867
MnlI	CCTC	7 cut(s)	159, 168, 178, 324, 515, 601, 1086
MseI	TTAA	4 cut(s)	452, 537, 609, 702
MslI	CAYNNNNRTG	2 cut(s)	249, 322
MspI	CCGG	1 cut(s)	995
MspR9I	CCNGG	2 cut(s)	995, 996
MvnI	CGCG	1 cut(s)	138
NciI	CCSGG	2 cut(s)	995, 996
NdeII	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
NlaIII	CATG	4 cut(s)	248, 481, 597, 812
NlaIV	GGNNCC	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	984
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	283, 568, 692, 776
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	599, 685, 792, 968
PspN4I	GGNNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	291, 323
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	13, 191
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	2 cut(s)	249, 322
SaqAI	TTAA	4 cut(s)	452, 537, 609, 702
SatI	GCNGC	4 cut(s)	598, 684, 791, 967
Sau3AI	GATC	6 cut(s)	13, 39, 110, 191, 586, 937
ScrFI	CCNGG	2 cut(s)	995, 996
SfaNI	GCATC	3 cut(s)	244, 283, 989
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	984
SlaI	CTCGAG	1 cut(s)	984
SmaI	CCCGGG	1 cut(s)	996
SmiMI	CAYNNNNRTG	2 cut(s)	249, 322
SmlI	CTYRAG	3 cut(s)	150, 854, 984
SmoI	CTYRAG	3 cut(s)	150, 854, 984
Sse9I	AATT	5 cut(s)	415, 427, 606, 1009, 1065
SsiI	CCGC	2 cut(s)	5, 1041
SspI	AATATT	3 cut(s)	104, 545, 945
SspMI	CTAG	3 cut(s)	171, 1059, 1106
StyD4I	CCNGG	2 cut(s)	993, 994
StyI	CCWWGG	3 cut(s)	58, 350, 1003
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	313, 465
TaqI	TCGA	7 cut(s)	286, 459, 566, 774, 801, 940, 985
TasI	AATT	5 cut(s)	415, 427, 606, 1009, 1065
TfiI	GAWTC	4 cut(s)	283, 568, 692, 776
Tru1I	TTAA	4 cut(s)	452, 537, 609, 702
Tru9I	TTAA	4 cut(s)	452, 537, 609, 702
TscAI	CASTG	1 cut(s)	1120
TseI	GCWGC	4 cut(s)	597, 683, 790, 966
TspDTI	ATGAA	4 cut(s)	276, 876, 932, 1044
TspGWI	ACGGA	2 cut(s)	77, 538
TspMI	CCCGGG	1 cut(s)	994
TspRI	CASTG	1 cut(s)	1120
Van91I	CCANNNNNTGG	1 cut(s)	439
XbaI	TCTAGA	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	984
XmaI	CCCGGG	1 cut(s)	994
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	3 cut(s)	171, 1059, 1106
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.