Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9851395 .. 9852276

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGGGAACGGGGCTGGTTGATTCGATTGGATGCAGAACAAAAGTTACGTCCTCCATTATCGTGGAGTAATGGAGCCTTGGAAAAGCCAAGGGTAATAAACACAGTAGACTTTGGCGTACTTGAAGTGGCAAAACCTTATCTCTTGGCAAGTAATTACGACAAGAATTACCACAAGCTGGCTGTTTCCTTAAATCTCGACGTCTTCCCTGCAGTCATGCTGGTTAGGGATGGAGTTTTATACCTCGGAAAGTGGTCTGGTGGTGGTGTTGAAGTTAAAGAATATTCCGTCCAACTCTCCCCGTCGAATCCTGATGATGATGATGATCCCTCATGCAGCAAAACAATTAAAGCTAATGATTATGATGATGTTATTTTTTACCAAGGAAAGTTTTGTGCAGTCTCTCAGTCTGGGAAACTTGCAGCGATGGATTCTTCCTTTAAGTGGAAAGTGATTGCGTTTCCAGTATCTACTTCAATGTGGTGGAAGAAGGAGAAGAAGAAGAACTTGGTCGAATCTCTCGGGGAGCTGCTTTTAGTCGAAAGACATGGTTCTACTTTTGTTGCAAAACATTGTTCTGTGGAAGATATGCTCAAGAATGAAGTCAAGTTCAAGGTTTACAAGTTGGATGGAGTTCGGAAGCAATGGGTTGAGATGAAGGGTTCGGATTTGGATGATCGAATATTTTTTGTGGGGGAAGACTGCTGCTTTTCAGTTTCTACTCGAGACTTCCCGGGATGCCAAAGGAATTGCATGTATTTTTGTTACGAAGTTTGGTGTGGTAAGAATGTCATCTCTAGTAGAATTGGAGTGTTCCACTTGGATGTTGGGAGGGGGTCGCCACTAGAAGCCAGTGCTAACATCTTTCTGCCACCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

293

Amino Acids

33.05

Weight (kDa)

6.89

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	106 - 272	2.7e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	178, 444
AgsI	TTSAA	4 cut(s)	125, 272, 477, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	3 cut(s)	178, 353, 529
AluI	AGCT	3 cut(s)	178, 353, 529
Alw26I	GTCTC	2 cut(s)	406, 720
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	3 cut(s)	521, 723, 733
ApeKI	GCWGC	4 cut(s)	336, 422, 529, 705
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AsuC2I	CCSGG	2 cut(s)	734, 735
AvaI	CYCGRG	3 cut(s)	521, 723, 733
BbsI	GAAGAC	2 cut(s)	196, 705
BbvI	GCAGC	4 cut(s)	348, 434, 516, 692
BccI	CCATC	3 cut(s)	224, 421, 623
BcnI	CCSGG	2 cut(s)	734, 735
BcoDI	GTCTC	2 cut(s)	406, 720
BfaI	CTAG	2 cut(s)	798, 845
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	4 cut(s)	337, 423, 530, 706
BlsI	GCNGC	4 cut(s)	338, 424, 531, 707
Bme1390I	CCNGG	2 cut(s)	734, 735
BmeT110I	CYCGRG	3 cut(s)	521, 723, 733
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	734, 735
BmsI	GCATC	2 cut(s)	22, 728
BpiI	GAAGAC	2 cut(s)	196, 705
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	2 cut(s)	734, 735
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	5 cut(s)	78, 89, 244, 382, 733
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 444
Bse1I	ACTGG	2 cut(s)	464, 852
Bse3DI	GCAATG	1 cut(s)	650
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	5 cut(s)	78, 89, 244, 382, 733
BseGI	GGATG	6 cut(s)	37, 235, 634, 679, 743, 829
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	178, 444
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	464, 852
BseXI	GCAGC	4 cut(s)	348, 434, 516, 692
BsgI	GTGCAG	1 cut(s)	417
BsiHKCI	CYCGRG	3 cut(s)	521, 723, 733
BsiSI	CCGG	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	178, 444
BsmAI	GTCTC	2 cut(s)	406, 720
BsoBI	CYCGRG	3 cut(s)	521, 723, 733
Bsp143I	GATC	2 cut(s)	325, 676
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	2 cut(s)	464, 852
BssECI	CCNNGG	5 cut(s)	78, 89, 244, 382, 733
BssMI	GATC	2 cut(s)	325, 676
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	3 cut(s)	78, 89, 382
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	6 cut(s)	37, 235, 634, 679, 743, 829
BstKTI	GATC	2 cut(s)	328, 679
BstMAI	GTCTC	2 cut(s)	406, 720
BstMBI	GATC	2 cut(s)	325, 676
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	732, 733
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	348, 434, 516, 692
BstV2I	GAAGAC	2 cut(s)	196, 705
BstXI	CCANNNNNNTGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	6 cut(s)	37, 235, 634, 679, 743, 829
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	1 cut(s)	180
Cfr9I	CCCGGG	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	4 cut(s)	217, 333, 548, 754
CviJI	RGCY	8 cut(s)	15, 77, 88, 178, 182, 353, 529, 851
CviKI_1	RGCY	8 cut(s)	15, 77, 88, 178, 182, 353, 529, 851
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	327, 678
DpnII	GATC	2 cut(s)	325, 676
Eco130I	CCWWGG	3 cut(s)	78, 89, 382
Eco88I	CYCGRG	3 cut(s)	521, 723, 733
EcoT14I	CCWWGG	3 cut(s)	78, 89, 382
ErhI	CCWWGG	3 cut(s)	78, 89, 382
FaeI	CATG	4 cut(s)	220, 336, 551, 757
FaiI	YATR	8 cut(s)	218, 241, 334, 363, 549, 590, 755, 880
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	4 cut(s)	216, 332, 547, 753
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	337, 423, 530, 706
FokI	GGATG	6 cut(s)	44, 242, 641, 686, 750, 836
Fsp4HI	GCNGC	4 cut(s)	337, 423, 530, 706
FspBI	CTAG	2 cut(s)	798, 845
GluI	GCNGC	4 cut(s)	337, 423, 530, 706
HapII	CCGG	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	220, 336, 551, 757
HinfI	GANTC	4 cut(s)	22, 307, 431, 515
HpaII	CCGG	1 cut(s)	734
Hpy166II	GTNNAC	2 cut(s)	109, 619
Hpy188I	TCNGA	3 cut(s)	248, 639, 667
Hpy188III	TCNNGA	4 cut(s)	197, 311, 595, 725
Hpy8I	GTNNAC	2 cut(s)	109, 619
Hpy99I	CGWCG	2 cut(s)	203, 307
HpyAV	CCTTC	2 cut(s)	484, 652
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	49, 201
HpyCH4V	TGCA	7 cut(s)	35, 212, 336, 398, 422, 566, 753
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	49, 201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	220, 336, 551, 757
Kzo9I	GATC	2 cut(s)	325, 676
LmnI	GCTCC	2 cut(s)	74, 526
LpnPI	CCDG	9 cut(s)	164, 206, 222, 243, 324, 396, 477, 747, 865
Lsp1109I	GCAGC	4 cut(s)	348, 434, 516, 692
LweI	GCATC	2 cut(s)	22, 728
MaeI	CTAG	2 cut(s)	798, 845
MaeII	ACGT	2 cut(s)	49, 201
MaeIII	GTNAC	2 cut(s)	45, 764
MalI	GATC	2 cut(s)	327, 678
MboI	GATC	2 cut(s)	325, 676
MboII	GAAGA	8 cut(s)	196, 426, 499, 508, 511, 514, 596, 710
MluCI	AATT	5 cut(s)	154, 166, 345, 748, 804
MmeI	TCCRAC	2 cut(s)	316, 606
MnlI	CCTC	4 cut(s)	63, 254, 340, 825
MseI	TTAA	4 cut(s)	191, 276, 348, 441
MslI	CAYNNNNRTG	2 cut(s)	61, 822
MspI	CCGG	1 cut(s)	734
MspR9I	CCNGG	2 cut(s)	734, 735
NciI	CCSGG	2 cut(s)	734, 735
NdeII	GATC	2 cut(s)	325, 676
NlaIII	CATG	4 cut(s)	220, 336, 551, 757
NlaIV	GGNNCC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	723
PfeI	GAWTC	4 cut(s)	22, 307, 431, 515
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	338, 424, 531, 707
PspN4I	GGNNCC	1 cut(s)	76
PsrI	GAACNNNNNNTAC	2 cut(s)	30, 62
PstI	CTGCAG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	61, 822
SaqAI	TTAA	4 cut(s)	191, 276, 348, 441
SatI	GCNGC	4 cut(s)	337, 423, 530, 706
Sau3AI	GATC	2 cut(s)	325, 676
ScrFI	CCNGG	2 cut(s)	734, 735
SetI	ASST	8 cut(s)	52, 139, 180, 204, 246, 355, 531, 618
SfaNI	GCATC	2 cut(s)	22, 728
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	723
SlaI	CTCGAG	1 cut(s)	723
SmaI	CCCGGG	1 cut(s)	735
SmiMI	CAYNNNNRTG	2 cut(s)	61, 822
SmlI	CTYRAG	2 cut(s)	593, 723
SmoI	CTYRAG	2 cut(s)	593, 723
Sse9I	AATT	5 cut(s)	154, 166, 345, 748, 804
SspI	AATATT	2 cut(s)	284, 684
SspMI	CTAG	2 cut(s)	798, 845
StyD4I	CCNGG	2 cut(s)	732, 733
StyI	CCWWGG	3 cut(s)	78, 89, 382
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	2 cut(s)	52, 204
TaqI	TCGA	7 cut(s)	25, 198, 305, 513, 540, 679, 724
TasI	AATT	5 cut(s)	154, 166, 345, 748, 804
TfiI	GAWTC	4 cut(s)	22, 307, 431, 515
Tru1I	TTAA	4 cut(s)	191, 276, 348, 441
Tru9I	TTAA	4 cut(s)	191, 276, 348, 441
TscAI	CASTG	1 cut(s)	859
TseI	GCWGC	4 cut(s)	336, 422, 529, 705
TspDTI	ATGAA	2 cut(s)	615, 671
TspGWI	ACGGA	1 cut(s)	277
TspMI	CCCGGG	1 cut(s)	733
TspRI	CASTG	1 cut(s)	859
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XhoI	CTCGAG	1 cut(s)	723
XmaI	CCCGGG	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	798, 845
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.