Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

11062443 .. 11063585

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTGGTAGAGATATTCCAGATGAATTGATAGAGATAATCCTAAAGCACCTTGACCTTTCAAACGAAACTGATATTAATCGATTCCGTGCCGTCTGTCAATCATGGAGGTCTTCTATTCCTAGAGTTGAGAGAAAGCTCCTATTACCCAACAGATTTGAGATAGAATCTGACTCCTGGACTCATAGATTCTTACCCTCCAAGACCGAGAGCATAGTCTATCATATTACACCACTTGCCGATGATCCCGATAGAAAGCAAAGGGGCTGGCTAATTAGGTTAGATAGTGACGGAAAGTTAGTCGATCCATTATCCCAAACCGACCACAAAGGAAGGACACCATTCCGGCCAAAGGTAATTAACTTTCTTGACTTTCGCGTATTTGAATTGGCAAGAACTTATTGTAGTGGCCACTGGAATAAGATGGCCGTGTCCGAGAACCATGATGTCCCTGCGGTCATGATCTTGAGGGATAAAATATTGTATGGCGGAAAACTAGGTCTTCACGTCAGAGATGCAACCAAGCTCTACCTAAATCCGGATTATCCTGATGGTGTTGCCTTGAATAGAATGACAAAGACTCCTGTTGATGATGTTATTTTTTATCAAGGAAAGTTTTATGCTGTCTCAGAGTATGGGGGAGCTATAGTGATGGATTCTTCATGTAATTTTAAAGAGGTAAACCTAACGTGGCCAATATGTAATTTGATCAGTTGTGACAAGAAGATGTATTTGGTCGAATCACTCGGGGAGGTGTTGTTAGTTGCGAGACGAGGGCCTAGATTCATCGGCGAAGGTTATTTGGTGGACAATGTGTTCAACAAGGAAGTTATATTCATGGTTTACAAGTTGGATGAAGAAAGGAAGGGATGGGTGGAGATGAAAGCTTCAGAATTAAGTGATCGAATATTGTTTGTGGCTGATGGTCTCTTTAGCTTCTCTGTTCCTGCTAAAGAGTTCCCAGGATGCCGAGGGAGTTGCATTTATTTCTCTTATGAACGTCGAGTTGCAAGGGGTACTCCTAAAAGTATCTCTAGTCAGATTGGAGTGTTCAACTTATATACGCAAAGGGCATCGCAGTTAGGATCTTATCCAGCCAGTGCTAATATCTTTTTGCCACCCCCGACTTGGCCTAGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

381

Amino Acids

43.53

Weight (kDa)

8.54

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 45	3.2e-06	F-box domain
Beta-prop_KIB1-4	PF03478	87 - 352	7.3e-31	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	2 cut(s)	455, 489
AclWI	GGATC	3 cut(s)	239, 299, 1093
AcoI	YGGCCR	4 cut(s)	347, 409, 426, 692
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	1 cut(s)	1018
AfiI	CCNNNNNNNGG	3 cut(s)	352, 538, 1128
AgsI	TTSAA	5 cut(s)	63, 386, 565, 820, 1054
AjiI	CACGTC	1 cut(s)	508
AjnI	CCWGG	2 cut(s)	176, 961
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AloI	GAACNNNNNNTCC	2 cut(s)	800, 832
AluBI	AGCT	5 cut(s)	139, 526, 644, 887, 936
AluI	AGCT	5 cut(s)	139, 526, 644, 887, 936
Alw26I	GTCTC	3 cut(s)	631, 763, 932
AlwI	GGATC	3 cut(s)	239, 299, 1093
Ama87I	CYCGRG	1 cut(s)	746
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	7 cut(s)	347, 409, 426, 692, 776, 1130, 1136
AseI	ATTAAT	1 cut(s)	78
AspA2I	CCTAGG	1 cut(s)	1133
AspS9I	GGNCC	2 cut(s)	776, 1137
AvaI	CYCGRG	1 cut(s)	746
AvrII	CCTAGG	1 cut(s)	1133
BalI	TGGCCA	2 cut(s)	411, 694
BbsI	GAAGAC	2 cut(s)	105, 494
BccI	CCATC	5 cut(s)	418, 545, 646, 864, 917
BceAI	ACGGC	2 cut(s)	77, 413
BcgI	CGANNNNNNTGC	2 cut(s)	960, 994
BciT130I	CCWGG	2 cut(s)	178, 963
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	631, 763, 932
BfaI	CTAG	5 cut(s)	123, 497, 780, 1035, 1134
BfmI	CTRYAG	1 cut(s)	645
BlnI	CCTAGG	1 cut(s)	1133
Bme1390I	CCNGG	2 cut(s)	178, 963
BmeT110I	CYCGRG	1 cut(s)	746
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	2 cut(s)	776, 1137
BmrFI	CCNGG	2 cut(s)	178, 963
BmsI	GCATC	3 cut(s)	505, 956, 1082
BpiI	GAAGAC	2 cut(s)	105, 494
BpuEI	CTTGAG	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	932
BsaJI	CCNNGG	3 cut(s)	961, 970, 1133
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	6 cut(s)	565, 595, 633, 663, 743, 773
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 538, 1128
Bse1I	ACTGG	2 cut(s)	419, 1098
Bse8I	GATNNNNATC	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	178, 963
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	961, 970, 1133
BseGI	GGATG	3 cut(s)	859, 875, 971
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	352, 538, 1128
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	2 cut(s)	419, 1098
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1132, 1138
BshVI	ATCGAT	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	746
BsiSI	CCGG	2 cut(s)	346, 539
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	352, 538, 1128
BsmAI	GTCTC	3 cut(s)	631, 763, 932
BsmBI	CGTCTC	1 cut(s)	763
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1132, 1138
Bso31I	GGTCTC	1 cut(s)	932
BsoBI	CYCGRG	1 cut(s)	746
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
BspACI	CCGC	2 cut(s)	455, 489
BspANI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1132, 1138
BspCNI	CTCAG	1 cut(s)	641
BspDI	ATCGAT	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	459
BspPI	GGATC	3 cut(s)	239, 299, 1093
BspTNI	GGTCTC	1 cut(s)	932
BsrI	ACTGG	2 cut(s)	419, 1098
BssECI	CCNNGG	3 cut(s)	961, 970, 1133
BssMI	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
BssT1I	CCWWGG	1 cut(s)	1133
Bst2UI	CCWGG	2 cut(s)	178, 963
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	859, 875, 971
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	6 cut(s)	247, 307, 465, 711, 904, 1088
BstMAI	GTCTC	3 cut(s)	631, 763, 932
BstMBI	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
BstNI	CCWGG	2 cut(s)	178, 963
BstSCI	CCNGG	2 cut(s)	176, 961
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	2 cut(s)	105, 494
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
Bsu15I	ATCGAT	1 cut(s)	82
BsuRI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1132, 1138
BsuTUI	ATCGAT	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	1059
BtrI	CACGTC	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	859, 875, 971
BtsIMutI	CAGTG	2 cut(s)	412, 1105
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	776, 1137
ClaI	ATCGAT	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	1017
CviAII	CATG	5 cut(s)	105, 443, 460, 663, 838
CviQI	GTAC	1 cut(s)	1017
DdeI	CTNAG	1 cut(s)	628
DpnI	GATC	6 cut(s)	246, 306, 464, 710, 903, 1087
DpnII	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
DraI	TTTAAA	1 cut(s)	673
EaeI	YGGCCR	4 cut(s)	347, 409, 426, 692
EciI	GGCGGA	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	1133
Eco31I	GGTCTC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	746
EcoO109I	RGGNCCY	2 cut(s)	776, 1137
EcoRII	CCWGG	2 cut(s)	176, 961
EcoT14I	CCWWGG	1 cut(s)	1133
ErhI	CCWWGG	1 cut(s)	1133
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	5 cut(s)	108, 446, 463, 666, 841
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	5 cut(s)	104, 442, 459, 662, 837
FbaI	TGATCA	1 cut(s)	708
FokI	GGATG	3 cut(s)	866, 882, 978
FspBI	CTAG	5 cut(s)	123, 497, 780, 1035, 1134
HaeIII	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1132, 1138
HapII	CCGG	2 cut(s)	346, 539
Hin1II	CATG	5 cut(s)	108, 446, 463, 666, 841
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	9 cut(s)	84, 167, 173, 181, 189, 580, 656, 740, 783
HpaII	CCGG	2 cut(s)	346, 539
Hpy166II	GTNNAC	3 cut(s)	682, 808, 844
Hpy188I	TCNGA	6 cut(s)	172, 436, 512, 631, 892, 1041
Hpy188III	TCNNGA	7 cut(s)	20, 248, 368, 460, 466, 539, 548
Hpy8I	GTNNAC	3 cut(s)	682, 808, 844
Hpy99I	CGWCG	1 cut(s)	1005
HpyAV	CCTTC	3 cut(s)	327, 788, 859
HpyCH4IV	ACGT	3 cut(s)	507, 689, 1000
HpyCH4V	TGCA	3 cut(s)	518, 981, 1010
HpyF3I	CTNAG	1 cut(s)	628
HpySE526I	ACGT	3 cut(s)	507, 689, 1000
Hsp92II	CATG	5 cut(s)	108, 446, 463, 666, 841
Kpn2I	TCCGGA	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
LmnI	GCTCC	2 cut(s)	144, 641
LweI	GCATC	3 cut(s)	505, 956, 1082
MaeI	CTAG	5 cut(s)	123, 497, 780, 1035, 1134
MaeII	ACGT	3 cut(s)	507, 689, 1000
MaeIII	GTNAC	2 cut(s)	287, 716
MalI	GATC	6 cut(s)	246, 306, 464, 710, 903, 1087
MboI	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
MboII	GAAGA	5 cut(s)	105, 494, 651, 736, 869
MflI	RGATCY	1 cut(s)	1085
MlsI	TGGCCA	2 cut(s)	411, 694
MluCI	AATT	7 cut(s)	26, 273, 357, 386, 667, 703, 893
MluNI	TGGCCA	2 cut(s)	411, 694
MlyI	GAGTC	3 cut(s)	167, 175, 574
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	7 cut(s)	102, 208, 462, 670, 745, 767, 965
Mox20I	TGGCCA	2 cut(s)	411, 694
MroI	TCCGGA	1 cut(s)	538
MscI	TGGCCA	2 cut(s)	411, 694
MseI	TTAA	4 cut(s)	78, 360, 672, 896
Msp20I	TGGCCA	2 cut(s)	411, 694
MspI	CCGG	2 cut(s)	346, 539
MspR9I	CCNGG	2 cut(s)	178, 963
MvaI	CCWGG	2 cut(s)	178, 963
MvnI	CGCG	1 cut(s)	378
NdeII	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
NlaIII	CATG	5 cut(s)	108, 446, 463, 666, 841
NmeAIII	GCCGAG	1 cut(s)	995
NmuCI	GTSAC	2 cut(s)	287, 716
PagI	TCATGA	1 cut(s)	459
PfeI	GAWTC	6 cut(s)	84, 167, 189, 656, 740, 783
PfoI	TCCNGGA	1 cut(s)	176
PleI	GAGTC	3 cut(s)	167, 175, 574
PpsI	GAGTC	3 cut(s)	167, 175, 574
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	176, 961
PspGI	CCWGG	2 cut(s)	176, 961
PspPI	GGNCC	2 cut(s)	776, 1137
PsuI	RGATCY	1 cut(s)	1085
RsaI	GTAC	1 cut(s)	1018
RsaNI	GTAC	1 cut(s)	1017
SaqAI	TTAA	4 cut(s)	78, 360, 672, 896
Sau3AI	GATC	6 cut(s)	244, 304, 462, 708, 901, 1085
Sau96I	GGNCC	2 cut(s)	776, 1137
SchI	GAGTC	3 cut(s)	167, 175, 574
ScrFI	CCNGG	2 cut(s)	178, 963
SfaNI	GCATC	3 cut(s)	505, 956, 1082
SfcI	CTRYAG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	7 cut(s)	26, 273, 357, 386, 667, 703, 893
SsiI	CCGC	2 cut(s)	455, 489
SspI	AATATT	2 cut(s)	480, 909
SspMI	CTAG	5 cut(s)	123, 497, 780, 1035, 1134
StyD4I	CCNGG	2 cut(s)	176, 961
StyI	CCWWGG	1 cut(s)	1133
TaiI	ACGT	3 cut(s)	510, 692, 1003
TaqI	TCGA	5 cut(s)	82, 303, 738, 904, 1003
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	7 cut(s)	26, 273, 357, 386, 667, 703, 893
TfiI	GAWTC	6 cut(s)	84, 167, 189, 656, 740, 783
Tru1I	TTAA	4 cut(s)	78, 360, 672, 896
Tru9I	TTAA	4 cut(s)	78, 360, 672, 896
TscAI	CASTG	2 cut(s)	419, 1105
TseFI	GTSAC	2 cut(s)	287, 716
Tsp45I	GTSAC	2 cut(s)	287, 716
TspDTI	ATGAA	7 cut(s)	39, 651, 775, 826, 870, 896, 1011
TspGWI	ACGGA	2 cut(s)	77, 306
TspRI	CASTG	2 cut(s)	419, 1105
VspI	ATTAAT	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1125
XmaJI	CCTAGG	1 cut(s)	1133
XspI	CTAG	5 cut(s)	123, 497, 780, 1035, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.