Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

25347365 .. 25348288

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1159500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTGCATCCGCTCTCCCGCTTATTTCGAGGGCAGCCCAAGCCCTTCCCCAAGGTATTCAACTTATTGGAATCTCGGGTATTTGAAGTGGCAAGAATATATAGTCTAGTAGAATATGGTGGGGAGATGCATGGTGATTTTAAGGTGGCTGCATCCTTGAATCTTGATTTCCCTGCTTTCATGGCAATTGATCTATTCGGAACGTTATACTACGGAGAGCTAGGTGCTGACGTTGTAGACTGCACCAACTTCCTTCTGAAGTTGGACGACGAATACCGTGATTTTCAAGACGTTATTTTCTTCAAAGGAAGGTTTTGTGCCGTGTGTCGTGACGGGAGAGCAGTGGCGGTTGATTCTTGTCTGAATACGGAAATGATTGCATCTCCATTACCGAATATCTCTTGCCTGGACCACGAGAAGAAGAAGATGTTGGTGGAATCGTTGGGAGAGCTGCTTTTAGTTGATATATATTTGAAGGGAAATCCGTCACACTATACATTCGAGATTTTTAAGCTGGACGCTCACGCTCACGAGAAGCAATGGGTTAAGCTAGAGGTGCAAGCTCTGGATGATCGAATATTGGTGCTAGGGGATGACGGCTGCTACTCTCTTTCAACTCAAGATTTCCCTGGAGTGGAAGGGAGATGTATTTATTTCCACAAGCCTCTTCATAGCAAGAGTTACGAGTTTCATCGGTTAAGAAGCATGTTAAGCGATATTGCAGTGTACAGCTTGGATTCTGGCCGTGTCTCTCGGTTAGCAGATTTTCCGAGTTCGAACATCATCTTTTGCCCACCCCCAACCTGGACGTGGCCTAACATGCCAGGGTTGTCTTGCAGACGTGATCAAGGGGAAGATTCCGGATCAAGGGCGAGGAAGAGGAGGAAGATCAAGGCTGTCGTGAGATGCAGCAATGGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

308

Amino Acids

34.95

Weight (kDa)

6.75

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	88 - 243	3.4e-24	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	860
AciI	CCGC	3 cut(s)	11, 19, 347
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	1 cut(s)	871
AcoI	YGGCCR	1 cut(s)	742
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	4 cut(s)	634, 804, 810, 867
AgsI	TTSAA	7 cut(s)	61, 86, 160, 287, 304, 475, 615
AjiI	CACGTC	2 cut(s)	810, 842
AjnI	CCWGG	4 cut(s)	405, 628, 803, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	6 cut(s)	220, 451, 514, 550, 563, 732
AluI	AGCT	6 cut(s)	220, 451, 514, 550, 563, 732
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	1 cut(s)	871
Ama87I	CYCGRG	1 cut(s)	75
Aor13HI	TCCGGA	1 cut(s)	860
AoxI	GGCC	2 cut(s)	742, 812
ApeKI	GCWGC	5 cut(s)	34, 149, 451, 600, 909
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	776
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	409
BauI	CACGAG	2 cut(s)	413, 530
BbvI	GCAGC	4 cut(s)	46, 136, 438, 587
BceAI	ACGGC	3 cut(s)	305, 613, 729
BciT130I	CCWGG	4 cut(s)	407, 630, 805, 825
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	4 cut(s)	107, 221, 551, 587
BisI	GCNGC	5 cut(s)	35, 150, 452, 601, 910
BlsI	GCNGC	5 cut(s)	36, 151, 453, 602, 911
Bme1390I	CCNGG	4 cut(s)	407, 630, 805, 825
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	75
BmgBI	CACGTC	2 cut(s)	810, 842
BmgT120I	GGNCC	1 cut(s)	409
BmrFI	CCNGG	4 cut(s)	407, 630, 805, 825
BmsI	GCATC	5 cut(s)	16, 117, 161, 389, 896
BpmI	CTGGAG	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	776
BpuEI	CTTGAG	1 cut(s)	603
BsaJI	CCNNGG	3 cut(s)	51, 628, 824
BsaWI	WCCGGW	1 cut(s)	860
Bsc4I	CCNNNNNNNGG	4 cut(s)	634, 804, 810, 867
Bse3DI	GCAATG	2 cut(s)	545, 919
BseAI	TCCGGA	1 cut(s)	860
BseBI	CCWGG	4 cut(s)	407, 630, 805, 825
BseDI	CCNNGG	3 cut(s)	51, 628, 824
BseGI	GGATG	4 cut(s)	7, 152, 574, 598
BseLI	CCNNNNNNNGG	4 cut(s)	634, 804, 810, 867
BseMI	GCAATG	2 cut(s)	545, 919
BseRI	GAGGAG	1 cut(s)	895
BseXI	GCAGC	4 cut(s)	46, 136, 438, 587
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	744, 814
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	861
BslI	CCNNNNNNNGG	4 cut(s)	634, 804, 810, 867
BsmAI	GTCTC	1 cut(s)	754
BsnI	GGCC	2 cut(s)	744, 814
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	776
Bsp13I	TCCGGA	1 cut(s)	860
Bsp1407I	TGTACA	1 cut(s)	726
Bsp143I	GATC	5 cut(s)	190, 571, 844, 863, 888
BspACI	CCGC	3 cut(s)	11, 19, 347
BspANI	GGCC	2 cut(s)	744, 814
BspEI	TCCGGA	1 cut(s)	860
BspPI	GGATC	1 cut(s)	871
BspT104I	TTCGAA	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	545, 919
BsrGI	TGTACA	1 cut(s)	726
BssECI	CCNNGG	3 cut(s)	51, 628, 824
BssMI	GATC	5 cut(s)	190, 571, 844, 863, 888
BssSI	CACGAG	2 cut(s)	413, 530
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	2 cut(s)	413, 530
Bst2UI	CCWGG	4 cut(s)	407, 630, 805, 825
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	672, 872
BstAUI	TGTACA	1 cut(s)	726
BstBI	TTCGAA	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	561
BstF5I	GGATG	4 cut(s)	7, 152, 574, 598
BstKTI	GATC	5 cut(s)	193, 574, 847, 866, 891
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	5 cut(s)	190, 571, 844, 863, 888
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 182, 556, 711, 820
BstNI	CCWGG	4 cut(s)	407, 630, 805, 825
BstNSI	RCATGY	2 cut(s)	709, 823
BstSCI	CCNGG	4 cut(s)	405, 628, 803, 823
BstV1I	GCAGC	4 cut(s)	46, 136, 438, 587
BsuRI	GGCC	2 cut(s)	744, 814
BtrI	CACGTC	2 cut(s)	810, 842
BtsCI	GGATG	4 cut(s)	7, 152, 574, 598
BtsI	GCAGTG	2 cut(s)	348, 729
BtsIMutI	CAGTG	2 cut(s)	348, 729
Cac8I	GCNNGC	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	4 cut(s)	131, 181, 706, 820
CviQI	GTAC	1 cut(s)	727
DpnI	GATC	5 cut(s)	192, 573, 846, 865, 890
DpnII	GATC	5 cut(s)	190, 571, 844, 863, 888
EaeI	YGGCCR	1 cut(s)	742
Eam1104I	CTCTTC	2 cut(s)	672, 872
EarI	CTCTTC	2 cut(s)	672, 872
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	75
EcoRII	CCWGG	4 cut(s)	405, 628, 803, 823
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	134, 184, 709, 823
FatI	CATG	4 cut(s)	130, 180, 705, 819
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	35, 150, 452, 601, 910
FokI	GGATG	3 cut(s)	139, 581, 605
Fsp4HI	GCNGC	5 cut(s)	35, 150, 452, 601, 910
FspBI	CTAG	4 cut(s)	107, 221, 551, 587
GluI	GCNGC	5 cut(s)	35, 150, 452, 601, 910
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	744, 814
HapII	CCGG	1 cut(s)	861
HgaI	GACGC	1 cut(s)	527
Hin1II	CATG	4 cut(s)	134, 184, 709, 823
HinfI	GANTC	6 cut(s)	71, 160, 353, 437, 737, 857
HpaII	CCGG	1 cut(s)	861
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	238, 727
Hpy188I	TCNGA	4 cut(s)	200, 258, 363, 771
Hpy188III	TCNNGA	9 cut(s)	164, 287, 329, 502, 530, 566, 620, 861, 901
Hpy8I	GTNNAC	2 cut(s)	238, 727
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	5 cut(s)	55, 263, 303, 469, 632
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	5 cut(s)	203, 231, 291, 809, 841
HpyCH4V	TGCA	9 cut(s)	7, 130, 152, 243, 380, 559, 722, 837, 909
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 182, 556, 711, 820
HpySE526I	ACGT	5 cut(s)	203, 231, 291, 809, 841
Hsp92II	CATG	4 cut(s)	134, 184, 709, 823
Kpn2I	TCCGGA	1 cut(s)	860
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	5 cut(s)	190, 571, 844, 863, 888
Lsp1109I	GCAGC	4 cut(s)	46, 136, 438, 587
LweI	GCATC	5 cut(s)	16, 117, 161, 389, 896
MaeI	CTAG	4 cut(s)	107, 221, 551, 587
MaeII	ACGT	5 cut(s)	203, 231, 291, 809, 841
MaeIII	GTNAC	3 cut(s)	329, 486, 680
MalI	GATC	5 cut(s)	192, 573, 846, 865, 890
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	5 cut(s)	190, 571, 844, 863, 888
MboII	GAAGA	8 cut(s)	292, 430, 433, 436, 659, 866, 889, 898
MfeI	CAATTG	1 cut(s)	186
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	6 cut(s)	23, 547, 675, 867, 873, 876
Mph1103I	ATGCAT	1 cut(s)	132
MroI	TCCGGA	1 cut(s)	860
MseI	TTAA	5 cut(s)	141, 510, 546, 698, 710
MspI	CCGG	1 cut(s)	861
MspR9I	CCNGG	4 cut(s)	407, 630, 805, 825
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	4 cut(s)	407, 630, 805, 825
MwoI	GCNNNNNNNGC	5 cut(s)	40, 182, 556, 711, 820
NdeII	GATC	5 cut(s)	190, 571, 844, 863, 888
NlaIII	CATG	4 cut(s)	134, 184, 709, 823
NmuCI	GTSAC	2 cut(s)	329, 486
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	2 cut(s)	709, 823
NspV	TTCGAA	1 cut(s)	776
PfeI	GAWTC	6 cut(s)	71, 160, 353, 437, 737, 857
PkrI	GCNGC	5 cut(s)	36, 151, 453, 602, 911
Psp1406I	AACGTT	1 cut(s)	203
Psp6I	CCWGG	4 cut(s)	405, 628, 803, 823
PspGI	CCWGG	4 cut(s)	405, 628, 803, 823
PspPI	GGNCC	1 cut(s)	409
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SaqAI	TTAA	5 cut(s)	141, 510, 546, 698, 710
SatI	GCNGC	5 cut(s)	35, 150, 452, 601, 910
Sau3AI	GATC	5 cut(s)	190, 571, 844, 863, 888
Sau96I	GGNCC	1 cut(s)	409
ScrFI	CCNGG	4 cut(s)	407, 630, 805, 825
SfaNI	GCATC	5 cut(s)	16, 117, 161, 389, 896
SfuI	TTCGAA	1 cut(s)	776
SinI	GGWCC	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	3 cut(s)	11, 19, 347
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	4 cut(s)	107, 221, 551, 587
StyD4I	CCNGG	4 cut(s)	405, 628, 803, 823
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	5 cut(s)	206, 234, 294, 812, 844
TaqI	TCGA	4 cut(s)	28, 501, 574, 776
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	6 cut(s)	71, 160, 353, 437, 737, 857
Tru1I	TTAA	5 cut(s)	141, 510, 546, 698, 710
Tru9I	TTAA	5 cut(s)	141, 510, 546, 698, 710
TscAI	CASTG	2 cut(s)	348, 729
TseFI	GTSAC	2 cut(s)	329, 486
TseI	GCWGC	5 cut(s)	34, 149, 451, 600, 909
Tsp45I	GTSAC	2 cut(s)	329, 486
TspDTI	ATGAA	3 cut(s)	169, 659, 680
TspGWI	ACGGA	3 cut(s)	228, 383, 474
TspRI	CASTG	2 cut(s)	348, 729
VpaK11BI	GGWCC	1 cut(s)	409
XceI	RCATGY	2 cut(s)	709, 823
XcmI	CCANNNNNNNNNTGG	2 cut(s)	801, 807
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	4 cut(s)	107, 221, 551, 587
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.