Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

10585863 .. 10586267

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG117600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGACAGAAAGACAAAGATCTGATACATGTGGAAATCAGAGAGGGGAATGTTGGAGTGATCTTCCGGTTGAATTATTACAGAGCATTGCAAAGCGGCTTGATACCAAAATTGATGTTTCAAGATCCCGTGCTGTTTGTAAATCATGGCGGTTCTCTATTCCTCCTCTCACTGTGAACTCTCCACCCATCAAAGTACATCTCGGTAATGTTATCAGGAGAGGAGTACGACTTGTGAAAAAAACAACCCTCAGGATGAGGGTAGTCTATCATGTGGCACCTCAACCACCTGCTTCAAATTCAAGGGGTTGGTTGGTTAAGGTCACAGAAGGTGAAGCTCCACTGCACAAAACTCATCATGTTACATCCTCTCTCTGGAACCCCATTCCCAAAAAACCCGGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

10.75

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	18 - 50	2.5e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	274
AciI	CCGC	2 cut(s)	94, 148
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	2 cut(s)	195, 225
AfiI	CCNNNNNNNGG	1 cut(s)	372
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	71, 120, 294, 300
AluBI	AGCT	2 cut(s)	335, 402
AluI	AGCT	2 cut(s)	335, 402
AlwI	GGATC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	274
BccI	CCATC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	276, 377
BmrFI	CCNGG	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	258, 362
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	153, 234
BsgI	GTGCAG	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	65, 396
BslI	CCNNNNNNNGG	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	17, 58, 122
BspACI	CCGC	2 cut(s)	94, 148
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	276, 377
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	84
BssMI	GATC	3 cut(s)	17, 58, 122
Bst4CI	ACNGT	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	258, 362
BstKTI	GATC	3 cut(s)	20, 61, 125
BstMBI	GATC	3 cut(s)	17, 58, 122
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	394
BstX2I	RGATCY	2 cut(s)	17, 122
BstYI	RGATCY	2 cut(s)	17, 122
Bsu36I	CCTNAGG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	258, 362
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	168, 338
BveI	ACCTGC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	194, 224
CviAII	CATG	4 cut(s)	27, 144, 269, 356
CviJI	RGCY	3 cut(s)	97, 335, 402
CviKI_1	RGCY	3 cut(s)	97, 335, 402
CviQI	GTAC	2 cut(s)	194, 224
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	3 cut(s)	19, 60, 124
DpnII	GATC	3 cut(s)	17, 58, 122
Eco81I	CCTNAGG	1 cut(s)	248
FaeI	CATG	4 cut(s)	30, 147, 272, 359
FaiI	YATR	4 cut(s)	28, 145, 270, 357
FatI	CATG	4 cut(s)	26, 143, 268, 355
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	265, 349
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HapII	CCGG	2 cut(s)	65, 396
Hin1II	CATG	4 cut(s)	30, 147, 272, 359
HpaII	CCGG	2 cut(s)	65, 396
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	22, 39
Hpy188III	TCNNGA	4 cut(s)	120, 214, 250, 373
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	89, 343
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	30, 147, 272, 359
Kzo9I	GATC	3 cut(s)	17, 58, 122
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	78, 199, 235, 300, 358
MaeIII	GTNAC	2 cut(s)	319, 358
MalI	GATC	3 cut(s)	19, 60, 124
MboI	GATC	3 cut(s)	17, 58, 122
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	2 cut(s)	17, 122
MluCI	AATT	3 cut(s)	71, 108, 295
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	8 cut(s)	35, 171, 174, 212, 249, 257, 288, 376
MseI	TTAA	1 cut(s)	315
MspI	CCGG	2 cut(s)	65, 396
MspR9I	CCNGG	1 cut(s)	396
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	3 cut(s)	17, 58, 122
NlaIII	CATG	4 cut(s)	30, 147, 272, 359
NlaIV	GGNNCC	2 cut(s)	276, 377
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	295
PciI	ACATGT	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	96
PscI	ACATGT	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	276, 377
PsuI	RGATCY	2 cut(s)	17, 122
RsaI	GTAC	2 cut(s)	195, 225
RsaNI	GTAC	2 cut(s)	194, 224
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	3 cut(s)	17, 58, 122
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	6 cut(s)	280, 289, 321, 331, 337, 404
Sse9I	AATT	3 cut(s)	71, 108, 295
SsiI	CCGC	2 cut(s)	94, 148
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	172
TasI	AATT	3 cut(s)	71, 108, 295
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	175, 345
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	2 cut(s)	175, 345
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.