Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

9791673 .. 9792623

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016759

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGGGTAGTCTATCATGTGGCACCTCAACCACCTGCTTCAAATTCAAGGGGTTGGTTGGTTAAGGTCACAGAAGTGTCCTTGAATTCTGATTGTCCTGCACTTATGATGATTGTTGAAGGAAAATTGTACCACTGCAAATTAGGTGTTGATGGTGAAATTCCAAAGTGCAAGGAAATTGAAAGTCTTATCTCCTCGATCAAATATGTAGATGTTATTTGTCATGAGGGGAAGTTCTATGTTGTCTCCGTTGATGGGAGAACTGTAGTGGTTGATTCTTCTCTGACTGCTAAGATGATTGCAACCCCGATAAGTGCTCCTGCGATTCCTAGAAGTGTTCCTGCTTGCATTCGCGAGAGGTATTTGGTTGAGTCATTCGGAGAACTACTTTTAGTTATATATCTGGCCACTACAACAGAATGTAGGCATCTTTCAGAACTTGGTGTTACATTCGAGATTTTTAAGTTGAATGCAGCTGAGAAGCAATGGGTCGAGATGGCAACTTTGGATGATCGAATATTGTTTGTGGGTGAAGACAGCTGCTTCTCTGTGCTTGCTCGAGACTTTCCTGGTTGCAACGGGAACTGCATTTATTTCTATGATCCTTGCTCACGTAGATGTAAGTATCGTTCGCAACCACGAATATTCAGTAACATTGGAGTGTTCGACATTGATGGCGGTGGCAGTGGCAGTAATCGTTCGCCTCGGGTGTATTTTCTTGATGATGGCGGTGACAGTGCAAATATCTTTTGCCTACCTCAAGATTCGGCCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

260

Amino Acids

28.6

Weight (kDa)

5.46

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	27 - 223	5.6e-35	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	1 cut(s)	354
AciI	CCGC	2 cut(s)	678, 729
AclWI	GGATC	1 cut(s)	596
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	3 cut(s)	43, 85, 159
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	6 cut(s)	42, 48, 85, 119, 182, 469
AjnI	CCWGG	1 cut(s)	568
AleI	CACNNNNGTG	1 cut(s)	74
AluBI	AGCT	2 cut(s)	476, 540
AluI	AGCT	2 cut(s)	476, 540
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	250, 555
AlwI	GGATC	1 cut(s)	596
Ama87I	CYCGRG	2 cut(s)	558, 705
AoxI	GGCC	2 cut(s)	405, 768
ApeKI	GCWGC	2 cut(s)	473, 540
ApoI	RAATTY	3 cut(s)	43, 85, 159
AsuHPI	GGTGA	3 cut(s)	167, 542, 743
AvaI	CYCGRG	2 cut(s)	558, 705
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	485, 527
BccI	CCATC	5 cut(s)	146, 248, 490, 668, 719
BciT130I	CCWGG	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	250, 555
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	474, 541
BlsI	GCNGC	2 cut(s)	475, 542
Bme1390I	CCNGG	1 cut(s)	570
BmeT110I	CYCGRG	2 cut(s)	558, 705
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	704, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	704, 771
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	485, 527
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	407, 770
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	2 cut(s)	558, 705
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	250, 555
BsmI	GAATGC	2 cut(s)	348, 475
BsnI	GGCC	2 cut(s)	407, 770
BsoBI	CYCGRG	2 cut(s)	558, 705
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	198, 511, 601
Bsp68I	TCGCGA	1 cut(s)	354
BspACI	CCGC	2 cut(s)	678, 729
BspANI	GGCC	2 cut(s)	407, 770
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	704, 771
BssMI	GATC	3 cut(s)	198, 511, 601
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	2 cut(s)	265, 737
BstBAI	YACGTR	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	346, 555
BstDEI	CTNAG	2 cut(s)	291, 477
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	3 cut(s)	201, 514, 604
BstMAI	GTCTC	2 cut(s)	250, 555
BstMBI	GATC	3 cut(s)	198, 511, 601
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	485, 527
BstV2I	GAAGAC	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	407, 770
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	2 cut(s)	133, 691
BtsIMutI	CAGTG	3 cut(s)	133, 691, 742
BtuMI	TCGCGA	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	346, 555
CciI	TCATGA	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	17, 224, 777
CviJI	RGCY	4 cut(s)	407, 476, 540, 770
CviKI_1	RGCY	4 cut(s)	407, 476, 540, 770
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	2 cut(s)	291, 477
DpnI	GATC	3 cut(s)	200, 513, 603
DpnII	GATC	3 cut(s)	198, 511, 601
EaeI	YGGCCR	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	771
Eco88I	CYCGRG	2 cut(s)	558, 705
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	771
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	3 cut(s)	20, 227, 780
FaiI	YATR	9 cut(s)	18, 107, 207, 225, 240, 398, 400, 600, 778
FatI	CATG	3 cut(s)	16, 223, 776
Fnu4HI	GCNGC	2 cut(s)	474, 541
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	474, 541
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	474, 541
HaeIII	GGCC	2 cut(s)	407, 770
Hin1II	CATG	3 cut(s)	20, 227, 780
HinfI	GANTC	4 cut(s)	275, 325, 371, 764
HphI	GGTGA	3 cut(s)	167, 542, 743
Hpy188I	TCNGA	4 cut(s)	91, 285, 380, 436
Hpy188III	TCNNGA	7 cut(s)	224, 353, 454, 493, 560, 719, 761
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	265, 737
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	9 cut(s)	101, 138, 171, 302, 348, 473, 576, 588, 740
HpyF3I	CTNAG	2 cut(s)	291, 477
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	3 cut(s)	20, 227, 780
Kzo9I	GATC	3 cut(s)	198, 511, 601
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	7 cut(s)	48, 111, 333, 354, 389, 555, 582
Lsp1109I	GCAGC	2 cut(s)	485, 527
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	4 cut(s)	67, 445, 650, 731
MalI	GATC	3 cut(s)	200, 513, 603
MboI	GATC	3 cut(s)	198, 511, 601
MboII	GAAGA	2 cut(s)	270, 545
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	6 cut(s)	43, 85, 125, 140, 159, 177
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	6 cut(s)	36, 205, 220, 351, 714, 768
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	2 cut(s)	63, 462
MslI	CAYNNNNRTG	3 cut(s)	74, 616, 659
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	2 cut(s)	476, 540
MspR9I	CCNGG	1 cut(s)	570
Mva1269I	GAATGC	2 cut(s)	348, 475
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	354
NdeII	GATC	3 cut(s)	198, 511, 601
NlaIII	CATG	3 cut(s)	20, 227, 780
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	67, 731
NruI	TCGCGA	1 cut(s)	354
OliI	CACNNNNGTG	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	558
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	43
PctI	GAATGC	2 cut(s)	348, 475
PfeI	GAWTC	3 cut(s)	275, 325, 764
PkrI	GCNGC	2 cut(s)	475, 542
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	24
PsrI	GAACNNNNNNTAC	2 cut(s)	613, 645
PvuII	CAGCTG	2 cut(s)	476, 540
RruI	TCGCGA	1 cut(s)	354
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	3 cut(s)	74, 616, 659
SaqAI	TTAA	2 cut(s)	63, 462
SatI	GCNGC	2 cut(s)	474, 541
Sau3AI	GATC	3 cut(s)	198, 511, 601
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	9 cut(s)	28, 37, 69, 148, 362, 478, 542, 616, 760
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	558
SlaI	CTCGAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	3 cut(s)	74, 616, 659
SmlI	CTYRAG	2 cut(s)	558, 759
SmoI	CTYRAG	2 cut(s)	558, 759
Sse9I	AATT	6 cut(s)	43, 85, 125, 140, 159, 177
SsiI	CCGC	2 cut(s)	678, 729
SspI	AATATT	2 cut(s)	519, 645
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	2 cut(s)	265, 737
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	6 cut(s)	197, 453, 492, 514, 559, 666
TasI	AATT	6 cut(s)	43, 85, 125, 140, 159, 177
TfiI	GAWTC	3 cut(s)	275, 325, 764
Tru1I	TTAA	2 cut(s)	63, 462
Tru9I	TTAA	2 cut(s)	63, 462
TscAI	CASTG	3 cut(s)	140, 691, 742
TseFI	GTSAC	2 cut(s)	67, 731
TseI	GCWGC	2 cut(s)	473, 540
Tsp45I	GTSAC	2 cut(s)	67, 731
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	3 cut(s)	140, 691, 742
XapI	RAATTY	3 cut(s)	43, 85, 159
XhoI	CTCGAG	1 cut(s)	558
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.