Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

82796663 .. 82800393

Gene Structure 3731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTAGTGATCTTTCAGTTGAATTGTTAGAGAAAGTTGGAAAGTGCCTTAACTTGACCAACGATATTTCTCGATTCCGTGCTGTTTGTCGGTCATGGCAGTCCTCTGTTCCTCCCTTTACAAAAAATAAGCAGCAGCTCCTCTCTCCCATCAGAGGTCCCATACAACTCCCCAAGTATCCTGATAGTAATGGGAACTGGCCTAAGATGTTGAACCTCACCAAGAGGGTGATCTATCATGTGTCCCACAGTTCAAGTACATGGGTTGTTACTGTCAAACTAAAAGAATCGGGTGAAATTGATCACATGCTAGATCCACTCTTTCAATGCCCATTCTCGCGTGAGCAGTTCCCTGAGACATTCCCAGAGGCGTTCAACTTATTGGATGAAGATGTTCTGGTAGTTGAATTGGCAGAAGCTTATGGTCTAAGAGACACTAGTGAGGCTGGTTGTGATTATAGAGTGGCTATGTCCTTCAATCCTAGTTGTCCTGCACTCATGGTCGTTGTCAATGGAGTGTTGTACCACTGTAATTTAGGTGTTGATCCCATTCCAAAGTTAAAACCAGTGGAAGGTCTAGCAGCATACTCTCGGCTCGAAGATGTTATTTATTATGAGGAAAAATTTTATGCTGTTGCCAGTGATGCAATCACAGTAGTGCTGGATTCGAATTCTTTGCAGGTGGTGGATATACTTGTGAAGACTCGGATGTTGGGCCGTGAACGCCACAGGAAGTATTTGGTGGAATCAGCTGGAGATGTTTTTTTGGTTAAGAAAGTGCGTCACCTTAACTACAGAGTTTTTAAGTTGAATGCAATTGAGAAGTGCTGGGTTGAGATGGAGGACGATTGGGATTGGGATGGTCGAATATTGATCATAGATTCGGATGATGGCTGCTTCTTTCCTTCTGCTCAAGATTTCCCCAGAATTGGGCATGGGAACAATAGTTGCGTTTATTTCTATCATCCCAACTATACGCACTGGGCTCAATCTTGCATAGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

335

Amino Acids

38.31

Weight (kDa)

5.75

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	81 - 321	2.7e-18	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	670
AccII	CGCG	1 cut(s)	340
AclWI	GGATC	2 cut(s)	308, 539
AcsI	RAATTY	2 cut(s)	623, 670
AfaI	GTAC	2 cut(s)	259, 524
AfiI	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
AgsI	TTSAA	8 cut(s)	23, 214, 255, 326, 376, 407, 478, 811
AhlI	ACTAGT	1 cut(s)	437
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	3 cut(s)	139, 419, 752
AluI	AGCT	3 cut(s)	139, 419, 752
Alw26I	GTCTC	2 cut(s)	350, 426
AlwI	GGATC	2 cut(s)	308, 539
AoxI	GGCC	2 cut(s)	200, 715
ApeKI	GCWGC	4 cut(s)	133, 136, 581, 894
ApoI	RAATTY	2 cut(s)	623, 670
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	158, 715
AsuHPI	GGTGA	4 cut(s)	211, 241, 305, 776
AsuII	TTCGAA	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	988
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	4 cut(s)	145, 148, 593, 881
BccI	CCATC	4 cut(s)	158, 832, 854, 884
BceAI	ACGGC	1 cut(s)	702
BcgI	CGANNNNNNTGC	2 cut(s)	658, 692
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	2 cut(s)	301, 873
BcoDI	GTCTC	2 cut(s)	350, 426
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	5 cut(s)	6, 311, 438, 483, 578
BfmI	CTRYAG	1 cut(s)	793
BfuAI	ACCTGC	1 cut(s)	670
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	4 cut(s)	134, 137, 582, 895
BlsI	GCNGC	4 cut(s)	135, 138, 583, 896
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	158, 715
BmiI	GGNNCC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	991
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	897
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
Bse1I	ACTGG	4 cut(s)	203, 566, 639, 986
BseGI	GGATG	5 cut(s)	391, 714, 865, 892, 964
BseLI	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	4 cut(s)	203, 566, 639, 986
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	145, 148, 593, 881
BseYI	CCCAGC	1 cut(s)	828
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	202, 717
BslFI	GGGAC	2 cut(s)	144, 229
BslI	CCNNNNNNNGG	4 cut(s)	155, 572, 929, 930
BsmAI	GTCTC	2 cut(s)	350, 426
BsmFI	GGGAC	2 cut(s)	144, 229
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	202, 717
Bsp119I	TTCGAA	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp143I	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
BspANI	GGCC	2 cut(s)	202, 717
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	2 cut(s)	308, 539
BspT104I	TTCGAA	1 cut(s)	668
BsrI	ACTGG	4 cut(s)	203, 566, 639, 986
BssMI	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
Bst4CI	ACNGT	4 cut(s)	251, 274, 530, 655
BstBI	TTCGAA	1 cut(s)	668
BstDEI	CTNAG	3 cut(s)	204, 354, 428
BstF5I	GGATG	5 cut(s)	391, 714, 865, 892, 964
BstFNI	CGCG	1 cut(s)	340
BstKTI	GATC	6 cut(s)	13, 234, 304, 316, 547, 876
BstMAI	GTCTC	2 cut(s)	350, 426
BstMBI	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	644, 723
BstNSI	RCATGY	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	793
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	4 cut(s)	145, 148, 593, 881
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	202, 717
BtsCI	GGATG	5 cut(s)	391, 714, 865, 892, 964
BtsIMutI	CAGTG	4 cut(s)	526, 573, 646, 979
BveI	ACCTGC	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	158, 715
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	2 cut(s)	258, 523
CviAII	CATG	6 cut(s)	96, 239, 261, 307, 499, 935
CviQI	GTAC	2 cut(s)	258, 523
DdeI	CTNAG	3 cut(s)	204, 354, 428
DpnI	GATC	6 cut(s)	12, 233, 303, 315, 546, 875
DpnII	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
Eco24I	GRGCYC	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	988
FaeI	CATG	6 cut(s)	99, 242, 264, 310, 502, 938
FaqI	GGGAC	2 cut(s)	144, 229
FatI	CATG	6 cut(s)	95, 238, 260, 306, 498, 934
FbaI	TGATCA	2 cut(s)	301, 873
Fnu4HI	GCNGC	4 cut(s)	134, 137, 582, 895
FokI	GGATG	5 cut(s)	398, 721, 872, 899, 951
FriOI	GRGCYC	1 cut(s)	988
Fsp4HI	GCNGC	4 cut(s)	134, 137, 582, 895
FspBI	CTAG	5 cut(s)	6, 311, 438, 483, 578
GluI	GCNGC	4 cut(s)	134, 137, 582, 895
GsaI	CCCAGC	1 cut(s)	832
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	202, 717
HgaI	GACGC	1 cut(s)	770
Hin1II	CATG	6 cut(s)	99, 242, 264, 310, 502, 938
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	6 cut(s)	75, 287, 665, 703, 746, 881
HphI	GGTGA	4 cut(s)	211, 241, 305, 776
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	3 cut(s)	155, 708, 886
Hpy188III	TCNNGA	3 cut(s)	72, 182, 914
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	484, 566, 915
HpyCH4III	ACNGT	4 cut(s)	251, 274, 530, 655
HpyCH4V	TGCA	5 cut(s)	494, 647, 679, 815, 996
HpyF10VI	GCNNNNNNNGC	2 cut(s)	644, 723
HpyF3I	CTNAG	3 cut(s)	204, 354, 428
Hsp92II	CATG	6 cut(s)	99, 242, 264, 310, 502, 938
Ksp22I	TGATCA	2 cut(s)	301, 873
Kzo9I	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	4 cut(s)	145, 148, 593, 881
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	5 cut(s)	6, 311, 438, 483, 578
MaeIII	GTNAC	2 cut(s)	268, 782
MalI	GATC	6 cut(s)	12, 233, 303, 315, 546, 875
MboI	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
MboII	GAAGA	3 cut(s)	401, 611, 712
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	988
MluCI	AATT	8 cut(s)	23, 297, 407, 532, 623, 670, 816, 927
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	5 cut(s)	51, 560, 771, 789, 804
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	817
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	644, 723
NdeII	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
NlaIII	CATG	6 cut(s)	99, 242, 264, 310, 502, 938
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	668
OliI	CACNNNNGTG	1 cut(s)	656
PaqCI	CACCTGC	1 cut(s)	670
PctI	GAATGC	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	5 cut(s)	75, 287, 665, 746, 881
PkrI	GCNGC	4 cut(s)	135, 138, 583, 896
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	828
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	158, 715
PspPPI	RGGWCCY	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	259, 524
RsaNI	GTAC	2 cut(s)	258, 523
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	5 cut(s)	51, 560, 771, 789, 804
SatI	GCNGC	4 cut(s)	134, 137, 582, 895
Sau3AI	GATC	6 cut(s)	10, 231, 301, 313, 544, 873
Sau96I	GGNCC	2 cut(s)	158, 715
SchI	GAGTC	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	988
SetI	ASST	9 cut(s)	141, 160, 219, 421, 541, 577, 684, 754, 789
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	793
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	912
SmoI	CTYRAG	1 cut(s)	912
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	8 cut(s)	23, 297, 407, 532, 623, 670, 816, 927
SspI	AATATT	1 cut(s)	870
SspMI	CTAG	5 cut(s)	6, 311, 438, 483, 578
TaaI	ACNGT	4 cut(s)	251, 274, 530, 655
TaqI	TCGA	4 cut(s)	73, 597, 668, 865
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	8 cut(s)	23, 297, 407, 532, 623, 670, 816, 927
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	5 cut(s)	75, 287, 665, 746, 881
Tru1I	TTAA	5 cut(s)	51, 560, 771, 789, 804
Tru9I	TTAA	5 cut(s)	51, 560, 771, 789, 804
TscAI	CASTG	4 cut(s)	533, 573, 646, 986
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	4 cut(s)	133, 136, 581, 894
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	1 cut(s)	402
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	4 cut(s)	533, 573, 646, 986
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	623, 670
XceI	RCATGY	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	5 cut(s)	6, 311, 438, 483, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.