Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

6779415 .. 6779633

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTAAGTGATATGGCAGCGTACAGCTTGGATTCTGGCCGTGTCTCGCAGCTAGCAGATTTTCCAAGTTCAAACATCATCTTTTGCCCAACCCCAACCTGGACGTGGCCTAACATGCCAGAGTTGTCTTGCAGATGTGATCGAGGGGAAGATTCCGGATTGAGGGTGAGGAAGAGGAGGAAGATCTTGGCCGTCGTGGGATGCAGCAATGGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

73

Amino Acids

8.0

Weight (kDa)

8.49

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	155
AcoI	YGGCCR	2 cut(s)	37, 189
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	99, 105, 162
AgsI	TTSAA	1 cut(s)	72
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	2 cut(s)	27, 52
AluI	AGCT	2 cut(s)	27, 52
Alw26I	GTCTC	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	3 cut(s)	37, 107, 189
ApeKI	GCWGC	3 cut(s)	17, 49, 204
AsuHPI	GGTGA	1 cut(s)	178
AsuNHI	GCTAGC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	29, 61
BceAI	ACGGC	2 cut(s)	24, 176
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	3 cut(s)	18, 50, 205
BlsI	GCNGC	3 cut(s)	19, 51, 206
Bme1390I	CCNGG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	191
BmtI	GCTAGC	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 105, 162
Bse3DI	GCAATG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	3 cut(s)	99, 105, 162
BseMI	GCAATG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	29, 61
BshFI	GGCC	3 cut(s)	39, 109, 191
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	99, 105, 162
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	39, 109, 191
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	139, 183
BspANI	GGCC	3 cut(s)	39, 109, 191
BspEI	TCCGGA	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	214
BssMI	GATC	2 cut(s)	139, 183
Bst2UI	CCWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	142, 186
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	139, 183
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	29, 61
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	39, 109, 191
BtrI	CACGTC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	5 cut(s)	27, 39, 52, 109, 191
CviKI_1	RGCY	5 cut(s)	27, 39, 52, 109, 191
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	2 cut(s)	141, 185
DpnII	GATC	2 cut(s)	139, 183
EaeI	YGGCCR	2 cut(s)	37, 189
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	14, 116
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	18, 50, 205
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	3 cut(s)	18, 50, 205
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	3 cut(s)	18, 50, 205
HaeIII	GGCC	3 cut(s)	39, 109, 191
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	2 cut(s)	32, 152
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	156
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	132, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	118
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	139, 183
LpnPI	CCDG	5 cut(s)	21, 85, 112, 132, 169
Lsp1109I	GCAGC	2 cut(s)	29, 61
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	104
MalI	GATC	2 cut(s)	141, 185
MboI	GATC	2 cut(s)	139, 183
MboII	GAAGA	3 cut(s)	161, 184, 193
MflI	RGATCY	1 cut(s)	183
MnlI	CCTC	5 cut(s)	137, 156, 162, 168, 171
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	1 cut(s)	5
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	2 cut(s)	139, 183
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	32, 152
PkrI	GCNGC	3 cut(s)	19, 51, 206
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	18, 50, 205
Sau3AI	GATC	2 cut(s)	139, 183
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	4 cut(s)	29, 54, 101, 107
SfaNI	GCATC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	98
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	32, 152
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseI	GCWGC	3 cut(s)	17, 49, 204
XceI	RCATGY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	2 cut(s)	96, 102
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.