Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005120.1

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

64189 .. 64731

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005120.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggccgtgtccgagaaccttgatgtccctgcggtcatgatgttgagggataaaatactgtatggtggaaaactaggtcttcacgtcagagatgcaaccaagctctacctaaatccggattatcctgatggtgttgccttgaatagaaagacaaagactccggttgatgatgttattttttatcaaggaaagttttatgctgtctcaaagactgggggagctatagtgatggattcttcatgtaattttaaagtggtatacgtagcgtggccaatatgtaatttcatcagttgtgacaagaagatttatttggtggaatcactcggggagttgttgttagttgagagattagggcctagattcatcggcgaaggttatttggtggacaatgtgctcaacaaggacgttatattcatggtttacaagttggaagaaagggagggatgggtggagatgaaagcttcagaattaagtgatcgaatattgtttgtggctgatagagttcccaggatgccgagggagttgcatttatttctcttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

180

Amino Acids

20.51

Weight (kDa)

6.15

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	1 cut(s)	32
AcoI	YGGCCR	2 cut(s)	3, 269
AcuI	CTGAAG	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	506
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	3 cut(s)	103, 221, 461
AluI	AGCT	3 cut(s)	103, 221, 461
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	3 cut(s)	3, 269, 353
AspS9I	GGNCC	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	3 cut(s)	122, 223, 438
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	74, 357
BfmI	CTRYAG	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	508
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	82, 501
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	506, 515
BsaWI	WCCGGW	2 cut(s)	115, 160
BsaXI	ACNNNNNCTCC	6 cut(s)	142, 172, 210, 240, 320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	217
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	2 cut(s)	506, 515
BseGI	GGATG	2 cut(s)	449, 516
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	5, 271, 355
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	116, 161
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	5, 271, 355
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	5, 271, 355
BspEI	TCCGGA	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	506, 515
BssMI	GATC	1 cut(s)	475
BssNAI	GTATAC	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	449, 516
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	222
BstSNI	TACGTA	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	71
BstZ17I	GTATAC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	5, 271, 355
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	449, 516
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	353
CviAII	CATG	3 cut(s)	37, 240, 415
CviJI	RGCY	7 cut(s)	5, 103, 221, 271, 355, 461, 494
CviKI_1	RGCY	7 cut(s)	5, 103, 221, 271, 355, 461, 494
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	3, 269
Eco105I	TACGTA	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	506
FaeI	CATG	3 cut(s)	40, 243, 418
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	3 cut(s)	36, 239, 414
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	2 cut(s)	456, 523
FspBI	CTAG	2 cut(s)	74, 357
HaeIII	GGCC	3 cut(s)	5, 271, 355
HapII	CCGG	2 cut(s)	116, 161
Hin1II	CATG	3 cut(s)	40, 243, 418
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	4 cut(s)	157, 233, 317, 360
HpaII	CCGG	2 cut(s)	116, 161
Hpy166II	GTNNAC	3 cut(s)	259, 385, 421
Hpy188I	TCNGA	3 cut(s)	13, 89, 466
Hpy188III	TCNNGA	3 cut(s)	37, 116, 125
Hpy8I	GTNNAC	3 cut(s)	259, 385, 421
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	3 cut(s)	84, 261, 405
HpyCH4V	TGCA	2 cut(s)	95, 526
HpySE526I	ACGT	3 cut(s)	84, 261, 405
Hsp92II	CATG	3 cut(s)	40, 243, 418
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	7 cut(s)	42, 129, 138, 174, 198, 493, 520
LweI	GCATC	2 cut(s)	82, 501
MaeI	CTAG	2 cut(s)	74, 357
MaeII	ACGT	3 cut(s)	84, 261, 405
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	4 cut(s)	71, 228, 313, 443
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	3 cut(s)	244, 280, 467
MluNI	TGGCCA	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	3 cut(s)	39, 433, 510
Mox20I	TGGCCA	1 cut(s)	271
MroI	TCCGGA	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	2 cut(s)	249, 470
Msp20I	TGGCCA	1 cut(s)	271
MspI	CCGG	2 cut(s)	116, 161
MspR9I	CCNGG	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	508
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	3 cut(s)	40, 243, 418
NmeAIII	GCCGAG	1 cut(s)	540
NmuCI	GTSAC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	233, 317, 360
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	249, 470
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	82, 501
SfcI	CTRYAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	262
Sse9I	AATT	3 cut(s)	244, 280, 467
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	2 cut(s)	74, 357
StyD4I	CCNGG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	3 cut(s)	87, 264, 408
TaqI	TCGA	1 cut(s)	478
TasI	AATT	3 cut(s)	244, 280, 467
TfiI	GAWTC	3 cut(s)	233, 317, 360
Tru1I	TTAA	2 cut(s)	249, 470
Tru9I	TTAA	2 cut(s)	249, 470
TseFI	GTSAC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	5 cut(s)	228, 274, 352, 403, 470
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	2 cut(s)	74, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.