Isocitrate dehydrogenase NAD regulatory subunit 1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Iso_dh | PF00180 | 42 - 364 | 5.5e-79 | Isocitrate/isopropylmalate dehydrogenase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 169 |
| Acc36I | ACCTGC | 1 cut(s) | 169 |
| AccB1I | GGYRCC | 1 cut(s) | 247 |
| AccBSI | CCGCTC | 1 cut(s) | 49 |
| AccI | GTMKAC | 2 cut(s) | 207, 429 |
| AccII | CGCG | 3 cut(s) | 7, 65, 200 |
| AciI | CCGC | 7 cut(s) | 47, 65, 300, 321, 324, 848, 1088 |
| AclWI | GGATC | 4 cut(s) | 6, 16, 72, 858 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AcuI | CTGAAG | 1 cut(s) | 861 |
| AcyI | GRCGYC | 1 cut(s) | 311 |
| AfaI | GTAC | 1 cut(s) | 467 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 101, 107, 136, 143, 320 |
| AgsI | TTSAA | 3 cut(s) | 394, 732, 974 |
| AjnI | CCWGG | 3 cut(s) | 493, 676, 829 |
| AluBI | AGCT | 5 cut(s) | 333, 349, 625, 724, 800 |
| AluI | AGCT | 5 cut(s) | 333, 349, 625, 724, 800 |
| Alw21I | GWGCWC | 2 cut(s) | 483, 606 |
| Alw26I | GTCTC | 1 cut(s) | 958 |
| Alw44I | GTGCAC | 1 cut(s) | 602 |
| AlwI | GGATC | 4 cut(s) | 6, 16, 72, 858 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 800 |
| Ama87I | CYCGRG | 3 cut(s) | 136, 469, 476 |
| AoxI | GGCC | 4 cut(s) | 57, 66, 120, 151 |
| ApaLI | GTGCAC | 1 cut(s) | 602 |
| ApeKI | GCWGC | 5 cut(s) | 346, 714, 721, 797, 1097 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 389 |
| AspLEI | GCGC | 2 cut(s) | 7, 202 |
| AspS9I | GGNCC | 4 cut(s) | 67, 120, 152, 1048 |
| AsuC2I | CCSGG | 3 cut(s) | 102, 137, 138 |
| AvaI | CYCGRG | 3 cut(s) | 136, 469, 476 |
| AvaII | GGWCC | 1 cut(s) | 1048 |
| BaeGI | GKGCMC | 1 cut(s) | 606 |
| BanI | GGYRCC | 1 cut(s) | 247 |
| BanII | GRGCYC | 2 cut(s) | 115, 477 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 924, 956 |
| BauI | CACGAG | 1 cut(s) | 482 |
| Bbv12I | GWGCWC | 2 cut(s) | 483, 606 |
| BbvI | GCAGC | 5 cut(s) | 358, 701, 733, 809, 1084 |
| BccI | CCATC | 3 cut(s) | 178, 310, 626 |
| BceAI | ACGGC | 3 cut(s) | 44, 107, 155 |
| BciT130I | CCWGG | 3 cut(s) | 495, 678, 831 |
| BciVI | GTATCC | 1 cut(s) | 684 |
| BclI | TGATCA | 1 cut(s) | 519 |
| BcnI | CCSGG | 3 cut(s) | 102, 137, 138 |
| BcoDI | GTCTC | 1 cut(s) | 958 |
| BfaI | CTAG | 1 cut(s) | 782 |
| BfuAI | ACCTGC | 1 cut(s) | 169 |
| BfuI | GTATCC | 1 cut(s) | 684 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 65, 119, 297 |
| BisI | GCNGC | 8 cut(s) | 47, 66, 322, 347, 715, 722, 798, 1098 |
| BlsI | GCNGC | 8 cut(s) | 48, 67, 323, 348, 716, 723, 799, 1099 |
| BmcAI | AGTACT | 1 cut(s) | 467 |
| Bme1390I | CCNGG | 6 cut(s) | 102, 137, 138, 495, 678, 831 |
| Bme18I | GGWCC | 1 cut(s) | 1048 |
| BmeT110I | CYCGRG | 3 cut(s) | 136, 469, 476 |
| BmgT120I | GGNCC | 4 cut(s) | 67, 120, 152, 1048 |
| BmiI | GGNNCC | 2 cut(s) | 112, 249 |
| BmrFI | CCNGG | 6 cut(s) | 102, 137, 138, 495, 678, 831 |
| BmrI | ACTGGG | 1 cut(s) | 923 |
| BmsI | GCATC | 2 cut(s) | 183, 1075 |
| BmuI | ACTGGG | 1 cut(s) | 923 |
| BpmI | CTGGAG | 1 cut(s) | 516 |
| Bpu10I | CCTNAGC | 1 cut(s) | 738 |
| BpuEI | CTTGAG | 1 cut(s) | 497 |
| BpuMI | CCSGG | 3 cut(s) | 102, 137, 138 |
| BsaBI | GATNNNNATC | 1 cut(s) | 363 |
| BsaHI | GRCGYC | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 6 cut(s) | 116, 136, 242, 456, 677, 1051 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 825, 855 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 101, 107, 136, 143, 320 |
| Bse118I | RCCGGY | 2 cut(s) | 202, 230 |
| Bse1I | ACTGG | 1 cut(s) | 929 |
| Bse8I | GATNNNNATC | 1 cut(s) | 363 |
| BseBI | CCWGG | 3 cut(s) | 495, 678, 831 |
| BseDI | CCNNGG | 6 cut(s) | 116, 136, 242, 456, 677, 1051 |
| BseJI | GATNNNNATC | 1 cut(s) | 363 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 101, 107, 136, 143, 320 |
| BseMII | CTCAG | 1 cut(s) | 729 |
| BseNI | ACTGG | 1 cut(s) | 929 |
| BseRI | GAGGAG | 1 cut(s) | 269 |
| BseSI | GKGCMC | 1 cut(s) | 606 |
| BseX3I | CGGCCG | 1 cut(s) | 57 |
| BseXI | GCAGC | 5 cut(s) | 358, 701, 733, 809, 1084 |
| Bsh1236I | CGCG | 3 cut(s) | 7, 65, 200 |
| Bsh1285I | CGRYCG | 2 cut(s) | 60, 994 |
| BshFI | GGCC | 4 cut(s) | 59, 68, 122, 153 |
| BshNI | GGYRCC | 1 cut(s) | 247 |
| BsiEI | CGRYCG | 2 cut(s) | 60, 994 |
| BsiHKAI | GWGCWC | 2 cut(s) | 483, 606 |
| BsiHKCI | CYCGRG | 3 cut(s) | 136, 469, 476 |
| BsiSI | CCGG | 7 cut(s) | 56, 102, 137, 203, 231, 251, 352 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 101, 107, 136, 143, 320 |
| BsmAI | GTCTC | 1 cut(s) | 958 |
| BsnI | GGCC | 4 cut(s) | 59, 68, 122, 153 |
| BsoBI | CYCGRG | 3 cut(s) | 136, 469, 476 |
| Bsp1286I | GDGCHC | 4 cut(s) | 115, 477, 483, 606 |
| BspACI | CCGC | 7 cut(s) | 47, 65, 300, 321, 324, 848, 1088 |
| BspANI | GGCC | 4 cut(s) | 59, 68, 122, 153 |
| BspCNI | CTCAG | 1 cut(s) | 730 |
| BspFNI | CGCG | 3 cut(s) | 7, 65, 200 |
| BspLI | GGNNCC | 2 cut(s) | 112, 249 |
| BspMI | ACCTGC | 1 cut(s) | 169 |
| BspPI | GGATC | 4 cut(s) | 6, 16, 72, 858 |
| BspT107I | GGYRCC | 1 cut(s) | 247 |
| BsrBI | CCGCTC | 1 cut(s) | 49 |
| BsrFI | RCCGGY | 2 cut(s) | 202, 230 |
| BsrI | ACTGG | 1 cut(s) | 929 |
| BssAI | RCCGGY | 2 cut(s) | 202, 230 |
| BssECI | CCNNGG | 6 cut(s) | 116, 136, 242, 456, 677, 1051 |
| BssNI | GRCGYC | 1 cut(s) | 311 |
| BssSI | CACGAG | 1 cut(s) | 482 |
| BssT1I | CCWWGG | 1 cut(s) | 1051 |
| Bst2BI | CACGAG | 1 cut(s) | 482 |
| Bst2UI | CCWGG | 3 cut(s) | 495, 678, 831 |
| BstACI | GRCGYC | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 7 cut(s) | 198, 302, 306, 335, 407, 627, 719 |
| BstDEI | CTNAG | 5 cut(s) | 549, 643, 738, 1024, 1102 |
| BstDSI | CCRYGG | 1 cut(s) | 116 |
| BstEII | GGTNACC | 1 cut(s) | 226 |
| BstFNI | CGCG | 3 cut(s) | 7, 65, 200 |
| BstHHI | GCGC | 2 cut(s) | 7, 202 |
| BstMAI | GTCTC | 1 cut(s) | 958 |
| BstMCI | CGRYCG | 2 cut(s) | 60, 994 |
| BstNI | CCWGG | 3 cut(s) | 495, 678, 831 |
| BstNSI | RCATGY | 3 cut(s) | 241, 346, 721 |
| BstPI | GGTNACC | 1 cut(s) | 226 |
| BstSCI | CCNGG | 6 cut(s) | 100, 135, 136, 493, 676, 829 |
| BstSLI | GKGCMC | 1 cut(s) | 606 |
| BstUI | CGCG | 3 cut(s) | 7, 65, 200 |
| BstV1I | GCAGC | 5 cut(s) | 358, 701, 733, 809, 1084 |
| BstX2I | RGATCY | 1 cut(s) | 11 |
| BstYI | RGATCY | 1 cut(s) | 11 |
| BstZI | CGGCCG | 1 cut(s) | 57 |
| BsuI | GTATCC | 1 cut(s) | 684 |
| BsuRI | GGCC | 4 cut(s) | 59, 68, 122, 153 |
| BtgI | CCRYGG | 1 cut(s) | 116 |
| BtgZI | GCGATG | 1 cut(s) | 206 |
| BveI | ACCTGC | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 7 cut(s) | 198, 302, 306, 335, 407, 627, 719 |
| CaiI | CAGNNNCTG | 1 cut(s) | 800 |
| CfoI | GCGC | 2 cut(s) | 7, 202 |
| Cfr10I | RCCGGY | 2 cut(s) | 202, 230 |
| Cfr13I | GGNCC | 4 cut(s) | 67, 120, 152, 1048 |
| Cfr9I | CCCGGG | 1 cut(s) | 136 |
| CseI | GACGC | 1 cut(s) | 319 |
| Csp6I | GTAC | 1 cut(s) | 466 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 382, 417 |
| CviAII | CATG | 7 cut(s) | 238, 343, 419, 718, 826, 854, 955 |
| CviQI | GTAC | 1 cut(s) | 466 |
| DdeI | CTNAG | 5 cut(s) | 549, 643, 738, 1024, 1102 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| EagI | CGGCCG | 1 cut(s) | 57 |
| EciI | GGCGGA | 2 cut(s) | 339, 863 |
| EclXI | CGGCCG | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 1051 |
| Eco24I | GRGCYC | 2 cut(s) | 115, 477 |
| Eco47I | GGWCC | 1 cut(s) | 1048 |
| Eco52I | CGGCCG | 1 cut(s) | 57 |
| Eco57I | CTGAAG | 1 cut(s) | 861 |
| Eco88I | CYCGRG | 3 cut(s) | 136, 469, 476 |
| Eco91I | GGTNACC | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1048 |
| EcoO65I | GGTNACC | 1 cut(s) | 226 |
| EcoRII | CCWGG | 3 cut(s) | 493, 676, 829 |
| EcoT14I | CCWWGG | 1 cut(s) | 1051 |
| EcoT38I | GRGCYC | 2 cut(s) | 115, 477 |
| ErhI | CCWWGG | 1 cut(s) | 1051 |
| FaeI | CATG | 7 cut(s) | 241, 346, 422, 721, 829, 857, 958 |
| FatI | CATG | 7 cut(s) | 237, 342, 418, 717, 825, 853, 954 |
| FauI | CCCGC | 1 cut(s) | 293 |
| FbaI | TGATCA | 1 cut(s) | 519 |
| FblI | GTMKAC | 2 cut(s) | 207, 429 |
| Fnu4HI | GCNGC | 8 cut(s) | 47, 66, 322, 347, 715, 722, 798, 1098 |
| FriOI | GRGCYC | 2 cut(s) | 115, 477 |
| Fsp4HI | GCNGC | 8 cut(s) | 47, 66, 322, 347, 715, 722, 798, 1098 |
| FspBI | CTAG | 1 cut(s) | 782 |
| GlaI | GCGC | 2 cut(s) | 6, 201 |
| GluI | GCNGC | 8 cut(s) | 47, 66, 322, 347, 715, 722, 798, 1098 |
| GsuI | CTGGAG | 1 cut(s) | 516 |
| HaeIII | GGCC | 4 cut(s) | 59, 68, 122, 153 |
| HapII | CCGG | 7 cut(s) | 56, 102, 137, 203, 231, 251, 352 |
| HgaI | GACGC | 1 cut(s) | 319 |
| HhaI | GCGC | 2 cut(s) | 7, 202 |
| Hin1I | GRCGYC | 1 cut(s) | 311 |
| Hin1II | CATG | 7 cut(s) | 241, 346, 422, 721, 829, 857, 958 |
| Hin6I | GCGC | 2 cut(s) | 5, 200 |
| HinP1I | GCGC | 2 cut(s) | 5, 200 |
| HincII | GTYRAC | 1 cut(s) | 430 |
| HindII | GTYRAC | 1 cut(s) | 430 |
| HindIII | AAGCTT | 1 cut(s) | 623 |
| HinfI | GANTC | 6 cut(s) | 147, 266, 327, 498, 647, 895 |
| HpaII | CCGG | 7 cut(s) | 56, 102, 137, 203, 231, 251, 352 |
| Hpy166II | GTNNAC | 3 cut(s) | 208, 430, 604 |
| Hpy188I | TCNGA | 3 cut(s) | 538, 900, 991 |
| Hpy188III | TCNNGA | 5 cut(s) | 214, 274, 362, 656, 1039 |
| Hpy8I | GTNNAC | 3 cut(s) | 208, 430, 604 |
| Hpy99I | CGWCG | 6 cut(s) | 65, 110, 146, 176, 313, 431 |
| HpyAV | CCTTC | 4 cut(s) | 44, 583, 990, 994 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 888 |
| HpyCH4V | TGCA | 8 cut(s) | 196, 346, 409, 604, 629, 717, 721, 788 |
| HpyF3I | CTNAG | 5 cut(s) | 549, 643, 738, 1024, 1102 |
| HpySE526I | ACGT | 2 cut(s) | 426, 888 |
| Hsp92I | GRCGYC | 1 cut(s) | 311 |
| Hsp92II | CATG | 7 cut(s) | 241, 346, 422, 721, 829, 857, 958 |
| HspAI | GCGC | 2 cut(s) | 5, 200 |
| Ksp22I | TGATCA | 1 cut(s) | 519 |
| LmnI | GCTCC | 2 cut(s) | 110, 354 |
| Lsp1109I | GCAGC | 5 cut(s) | 358, 701, 733, 809, 1084 |
| LweI | GCATC | 2 cut(s) | 183, 1075 |
| MaeI | CTAG | 1 cut(s) | 782 |
| MaeII | ACGT | 2 cut(s) | 426, 888 |
| MaeIII | GTNAC | 7 cut(s) | 29, 82, 124, 160, 226, 592, 757 |
| MbiI | CCGCTC | 1 cut(s) | 49 |
| MboII | GAAGA | 3 cut(s) | 21, 289, 962 |
| MflI | RGATCY | 1 cut(s) | 11 |
| MhlI | GDGCHC | 4 cut(s) | 115, 477, 483, 606 |
| MluCI | AATT | 4 cut(s) | 385, 699, 974, 1092 |
| MlyI | GAGTC | 4 cut(s) | 275, 336, 507, 656 |
| MroXI | GAANNNNTTC | 1 cut(s) | 389 |
| MslI | CAYNNNNRTG | 1 cut(s) | 437 |
| MspA1I | CMGCKG | 1 cut(s) | 800 |
| MspI | CCGG | 7 cut(s) | 56, 102, 137, 203, 231, 251, 352 |
| MspR9I | CCNGG | 6 cut(s) | 102, 137, 138, 495, 678, 831 |
| MvaI | CCWGG | 3 cut(s) | 495, 678, 831 |
| MvnI | CGCG | 3 cut(s) | 7, 65, 200 |
| NciI | CCSGG | 3 cut(s) | 102, 137, 138 |
| NlaIII | CATG | 7 cut(s) | 241, 346, 422, 721, 829, 857, 958 |
| NlaIV | GGNNCC | 2 cut(s) | 112, 249 |
| NmeAIII | GCCGAG | 1 cut(s) | 267 |
| NmuCI | GTSAC | 6 cut(s) | 29, 82, 160, 226, 592, 757 |
| NspI | RCATGY | 3 cut(s) | 241, 346, 721 |
| PaeI | GCATGC | 1 cut(s) | 721 |
| PaeR7I | CTCGAG | 1 cut(s) | 476 |
| PaqCI | CACCTGC | 1 cut(s) | 169 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 156, 219 |
| PdmI | GAANNNNTTC | 1 cut(s) | 389 |
| PfeI | GAWTC | 2 cut(s) | 147, 895 |
| PflFI | GACNNNGTC | 1 cut(s) | 425 |
| PfoI | TCCNGGA | 1 cut(s) | 493 |
| PkrI | GCNGC | 8 cut(s) | 48, 67, 323, 348, 716, 723, 799, 1099 |
| Ple19I | CGATCG | 1 cut(s) | 994 |
| PleI | GAGTC | 4 cut(s) | 274, 335, 506, 655 |
| PpsI | GAGTC | 4 cut(s) | 274, 335, 506, 655 |
| PpuMI | RGGWCCY | 1 cut(s) | 1048 |
| Psp5II | RGGWCCY | 1 cut(s) | 1048 |
| Psp6I | CCWGG | 3 cut(s) | 493, 676, 829 |
| PspEI | GGTNACC | 1 cut(s) | 226 |
| PspGI | CCWGG | 3 cut(s) | 493, 676, 829 |
| PspN4I | GGNNCC | 2 cut(s) | 112, 249 |
| PspPI | GGNCC | 4 cut(s) | 67, 120, 152, 1048 |
| PspPPI | RGGWCCY | 1 cut(s) | 1048 |
| PspXI | VCTCGAGB | 1 cut(s) | 476 |
| PstNI | CAGNNNCTG | 1 cut(s) | 800 |
| PsuI | RGATCY | 1 cut(s) | 11 |
| PsyI | GACNNNGTC | 1 cut(s) | 425 |
| PvuI | CGATCG | 1 cut(s) | 994 |
| PvuII | CAGCTG | 1 cut(s) | 800 |
| RsaI | GTAC | 1 cut(s) | 467 |
| RsaNI | GTAC | 1 cut(s) | 466 |
| RseI | CAYNNNNRTG | 1 cut(s) | 437 |
| SalI | GTCGAC | 1 cut(s) | 428 |
| SatI | GCNGC | 8 cut(s) | 47, 66, 322, 347, 715, 722, 798, 1098 |
| Sau96I | GGNCC | 4 cut(s) | 67, 120, 152, 1048 |
| ScaI | AGTACT | 1 cut(s) | 467 |
| SchI | GAGTC | 4 cut(s) | 275, 336, 507, 656 |
| ScrFI | CCNGG | 6 cut(s) | 102, 137, 138, 495, 678, 831 |
| SduI | GDGCHC | 4 cut(s) | 115, 477, 483, 606 |
| SfaNI | GCATC | 2 cut(s) | 183, 1075 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 65 |
| Sfr274I | CTCGAG | 1 cut(s) | 476 |
| SinI | GGWCC | 1 cut(s) | 1048 |
| SlaI | CTCGAG | 1 cut(s) | 476 |
| SmaI | CCCGGG | 1 cut(s) | 138 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 437 |
| SmlI | CTYRAG | 2 cut(s) | 476, 512 |
| SmoI | CTYRAG | 2 cut(s) | 476, 512 |
| SphI | GCATGC | 1 cut(s) | 721 |
| Sse9I | AATT | 4 cut(s) | 385, 699, 974, 1092 |
| SsiI | CCGC | 7 cut(s) | 47, 65, 300, 321, 324, 848, 1088 |
| SspMI | CTAG | 1 cut(s) | 782 |
| StyD4I | CCNGG | 6 cut(s) | 100, 135, 136, 493, 676, 829 |
| StyI | CCWWGG | 1 cut(s) | 1051 |
| TaiI | ACGT | 2 cut(s) | 429, 891 |
| TasI | AATT | 4 cut(s) | 385, 699, 974, 1092 |
| TatI | WGTACW | 1 cut(s) | 465 |
| TauI | GCSGC | 3 cut(s) | 49, 68, 324 |
| TfiI | GAWTC | 2 cut(s) | 147, 895 |
| TseFI | GTSAC | 6 cut(s) | 29, 82, 160, 226, 592, 757 |
| TseI | GCWGC | 5 cut(s) | 346, 714, 721, 797, 1097 |
| Tsp45I | GTSAC | 6 cut(s) | 29, 82, 160, 226, 592, 757 |
| TspDTI | ATGAA | 2 cut(s) | 635, 708 |
| TspGWI | ACGGA | 4 cut(s) | 17, 70, 123, 159 |
| TspMI | CCCGGG | 1 cut(s) | 136 |
| Tth111I | GACNNNGTC | 1 cut(s) | 425 |
| VneI | GTGCAC | 1 cut(s) | 602 |
| VpaK11BI | GGWCC | 1 cut(s) | 1048 |
| XceI | RCATGY | 3 cut(s) | 241, 346, 721 |
| XhoI | CTCGAG | 1 cut(s) | 476 |
| XmaI | CCCGGG | 1 cut(s) | 136 |
| XmiI | GTMKAC | 2 cut(s) | 207, 429 |
| XmnI | GAANNNNTTC | 1 cut(s) | 389 |
| XspI | CTAG | 1 cut(s) | 782 |
| ZrmI | AGTACT | 1 cut(s) | 467 |