Rh2BG383600

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000567
Physical Location & Seq
Reverse (-)
54369600 .. 54372367
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG383600.1

Sequence Viewer

Length: 387 bp
ATGAACAGATTCATCCTCTTGAGTAAAGATATTTATTATCATGCTGAAGAGTGTAATTTTCTCTTTTGCAGCAAGGTAATTGTTAAGCTTAAGTATGCAGATCTTGTTTCCGTGCTTCCAACCAATGTCAGTGTAGTAGTATGGCCGATTCAAATCTGGAGATTCAGTGTAAATATATCAACCATGAATACACTGGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACTATGAGCTTACCTGAAGCTCCTACTCCAGCATATACAGAGATTGTCTTAAATTTGCCATATAAGCTCTTCGGAAAATGCACAAAGAGTCCGCTTAATATCACACTTGTGAACGCAGCTGAATTTGTACAAAGCCATAGCAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

7.65

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 211
AciI CCGC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 289, 359
AcuI CTGAAG 2 cut(s) 66, 273
AfaI GTAC 1 cut(s) 366
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 152
AleI CACNNNNGTG 1 cut(s) 344
AluBI AGCT 5 cut(s) 88, 246, 257, 304, 356
AluI AGCT 5 cut(s) 88, 246, 257, 304, 356
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 69, 353
ApoI RAATTY 2 cut(s) 289, 359
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 200
AvaII GGWCC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 81, 365
BfrI CTTAAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 100
BisI GCNGC 2 cut(s) 70, 354
BlsI GCNGC 2 cut(s) 71, 355
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 2 cut(s) 178, 249
BpuEI CTTGAG 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse1I ACTGG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 152
BseGI GGATG 2 cut(s) 12, 232
BseJI GATNNNNATC 1 cut(s) 152
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 81, 365
BshFI GGCC 1 cut(s) 145
BsnI GGCC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 364
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 311
BspTI CTTAAG 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 364
BsrI ACTGG 1 cut(s) 198
BssMI GATC 1 cut(s) 100
Bst6I CTCTTC 2 cut(s) 42, 311
BstAFI CTTAAG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 364
BstF5I GGATG 2 cut(s) 12, 232
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 227, 301
BstV1I GCAGC 2 cut(s) 81, 365
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 12, 232
BtsIMutI CAGTG 3 cut(s) 136, 172, 191
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 365
CviAII CATG 2 cut(s) 41, 184
CviJI RGCY 7 cut(s) 88, 145, 246, 257, 304, 356, 372
CviKI_1 RGCY 7 cut(s) 88, 145, 246, 257, 304, 356, 372
CviQI GTAC 1 cut(s) 365
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 42, 311
EarI CTCTTC 2 cut(s) 42, 311
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 66, 273
FaeI CATG 2 cut(s) 44, 187
FatI CATG 2 cut(s) 40, 183
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 70, 354
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 70, 354
GluI GCNGC 2 cut(s) 70, 354
GsuI CTGGAG 2 cut(s) 178, 249
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 2 cut(s) 44, 187
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 4 cut(s) 9, 148, 162, 325
Hpy166II GTNNAC 2 cut(s) 212, 349
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 2 cut(s) 19, 157
Hpy8I GTNNAC 2 cut(s) 212, 349
HpyAV CCTTC 1 cut(s) 191
HpyCH4V TGCA 4 cut(s) 69, 98, 221, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 301
Hsp92II CATG 2 cut(s) 44, 187
Kzo9I GATC 1 cut(s) 100
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 4 cut(s) 142, 179, 264, 279
Lsp1109I GCAGC 2 cut(s) 81, 365
LweI GCATC 1 cut(s) 217
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 2 cut(s) 59, 298
MflI RGATCY 1 cut(s) 100
MluCI AATT 5 cut(s) 55, 78, 289, 359, 382
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 2 cut(s) 143, 227
MnlI CCTC 2 cut(s) 26, 217
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 84, 90, 287, 333
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 227, 301
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 44, 187
OliI CACNNNNGTG 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 9, 148, 162
PkrI GCNGC 2 cut(s) 71, 355
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 4 cut(s) 84, 90, 287, 333
SatI GCNGC 2 cut(s) 70, 354
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 334
SetI ASST 8 cut(s) 78, 90, 202, 248, 253, 259, 306, 358
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 19, 89
SmoI CTYRAG 2 cut(s) 19, 89
Sse9I AATT 5 cut(s) 55, 78, 289, 359, 382
SsiI CCGC 1 cut(s) 329
TasI AATT 5 cut(s) 55, 78, 289, 359, 382
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 3 cut(s) 9, 148, 162
Tru1I TTAA 4 cut(s) 84, 90, 287, 333
Tru9I TTAA 4 cut(s) 84, 90, 287, 333
TscAI CASTG 3 cut(s) 136, 172, 198
TseI GCWGC 2 cut(s) 69, 353
TspDTI ATGAA 2 cut(s) 17, 200
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 3 cut(s) 136, 172, 198
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 2 cut(s) 289, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.