Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006625.1

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 336

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

gatgtcaccggcaacatgccgagggtgccagaggaggtgattgagtcgatcaggaagaacaagatgtgtttgaaaggcgggctggagacgccaatgggcgggggcgttagctcgctgaacatgcagctccagcgagatctcgatctctatgcttcgttggtcaactacttcaatctgcgtggcttacagaccaagcatggcaacgtcgacattctggtgatcagggagaacaccgagggtgagtactcggggctcgagcacgagatcattcctagagttgttgaaagccttaaaggtataaacaatgcaattccaaaatgtaaaattcattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

6.33

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	78, 99
AcsI	RAATTY	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	73, 172, 284
AluBI	AGCT	2 cut(s)	111, 127
AluI	AGCT	2 cut(s)	111, 127
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	80
Ama87I	CYCGRG	2 cut(s)	247, 254
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	324
AsuHPI	GGTGA	3 cut(s)	49, 229, 251
AvaI	CYCGRG	2 cut(s)	247, 254
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmcAI	AGTACT	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	247, 254
BmiI	GGNNCC	1 cut(s)	27
BpmI	CTGGAG	2 cut(s)	104, 113
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	20, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	20, 234
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	2 cut(s)	247, 254
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsoBI	CYCGRG	2 cut(s)	247, 254
Bsp1286I	GDGCHC	2 cut(s)	255, 261
Bsp143I	GATC	5 cut(s)	48, 136, 142, 219, 264
BspACI	CCGC	2 cut(s)	78, 99
BspLI	GGNNCC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	20, 234
BssMI	GATC	5 cut(s)	48, 136, 142, 219, 264
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	80, 113
BstKTI	GATC	5 cut(s)	51, 139, 145, 222, 267
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	5 cut(s)	48, 136, 142, 219, 264
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 88, 121, 130
BstNSI	RCATGY	2 cut(s)	19, 124
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	80, 113
Cfr10I	RCCGGY	1 cut(s)	8
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	3 cut(s)	16, 121, 197
CviJI	RGCY	6 cut(s)	82, 111, 127, 183, 253, 288
CviKI_1	RGCY	6 cut(s)	82, 111, 127, 183, 253, 288
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	5 cut(s)	50, 138, 144, 221, 266
DpnII	GATC	5 cut(s)	48, 136, 142, 219, 264
Eco24I	GRGCYC	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	247, 254
EcoT38I	GRGCYC	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	3 cut(s)	19, 124, 200
FaiI	YATR	5 cut(s)	17, 122, 150, 198, 299
FatI	CATG	3 cut(s)	15, 120, 196
FauI	CCCGC	2 cut(s)	71, 92
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	1 cut(s)	125
GsuI	CTGGAG	2 cut(s)	104, 113
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	19, 124, 200
HincII	GTYRAC	2 cut(s)	163, 208
HindII	GTYRAC	2 cut(s)	163, 208
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	49, 229, 251
Hpy166II	GTNNAC	2 cut(s)	163, 208
Hpy188III	TCNNGA	2 cut(s)	52, 140
Hpy8I	GTNNAC	2 cut(s)	163, 208
Hpy99I	CGWCG	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	124, 308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 88, 121, 130
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	19, 124, 200
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	48, 136, 142, 219, 264
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	22, 37, 42, 68, 143, 200, 208
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	50, 138, 144, 221, 266
MboI	GATC	5 cut(s)	48, 136, 142, 219, 264
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	255, 261
MluCI	AATT	2 cut(s)	309, 324
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	4 cut(s)	15, 25, 28, 229
MseI	TTAA	2 cut(s)	291, 334
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	4 cut(s)	25, 88, 121, 130
NdeII	GATC	5 cut(s)	48, 136, 142, 219, 264
NlaIII	CATG	3 cut(s)	19, 124, 200
NlaIV	GGNNCC	1 cut(s)	27
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	2 cut(s)	19, 124
PaeR7I	CTCGAG	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	291, 334
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	5 cut(s)	48, 136, 142, 219, 264
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	255, 261
SetI	ASST	5 cut(s)	39, 113, 129, 207, 298
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	309, 324
SsiI	CCGC	2 cut(s)	78, 99
SspMI	CTAG	1 cut(s)	273
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	4 cut(s)	47, 141, 207, 255
TasI	AATT	2 cut(s)	309, 324
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	291, 334
Tru9I	TTAA	2 cut(s)	291, 334
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	317
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	2 cut(s)	19, 124
XhoI	CTCGAG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.