RchiOBHm_Chr4g0395871

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000567
Physical Location & Seq
Forward (+)
11907593 .. 11908496
904 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36829

Sequence Viewer

Length: 495 bp
ATGGCAAAGCTAGATAGGCTAAAGAGGAAGGATGAGCGCCAAAGAGAGATCTGGTGCTCCTATAATAAGTTCATGTTTGTAAAATCATATAGGCCTAGTTGTGCACACACACCATCCCCAGGGGATTCTTTTTTTACGAGTGCTTTAATTGTATCTTTCATTTCTTTTCTGCAAGTAACTCCTTTGCGTACTTCAAGTTCTTTTTCTCAACTTTATTCTGCCTCTCATTATTCCACTTCTACCTTCAATCCGGACCGCGTACTTATATTGTTGATTATATGTATTTGTAGTGATTCATCATTTGGTTATCCTGGTGGACCCCTTTTGTTTAAGAATTTAAATTTTGGAATTGACTTAGACAGCAGCATTGCAAGTAATGATGCTTCTCCATTTGAACTTTTAGTTTTTCTATTTGAAAATATCATTATTTCATTTGAAGTTCTGGATGATGTTATGTGTAATTGCAAGTCCCCATGGAATAGATATCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

164

Amino Acids

18.74

Weight (kDa)

6.7

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 1 cut(s) 256
AcsI RAATTY 2 cut(s) 334, 340
AfaI GTAC 2 cut(s) 190, 261
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 5 cut(s) 195, 247, 395, 416, 437
AjnI CCWGG 2 cut(s) 118, 310
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 2 cut(s) 59, 106
Alw44I GTGCAC 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 1 cut(s) 92
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 2 cut(s) 334, 340
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 253, 317
AvaII GGWCC 2 cut(s) 253, 317
BaeGI GKGCMC 1 cut(s) 106
BarI GAAGNNNNNNTAC 2 cut(s) 367, 399
Bbv12I GWGCWC 2 cut(s) 59, 106
BbvI GCAGC 1 cut(s) 375
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 2 cut(s) 120, 312
BfaI CTAG 2 cut(s) 11, 96
BfoI RGCGCY 1 cut(s) 40
BglII AGATCT 1 cut(s) 48
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 2 cut(s) 120, 312
Bme18I GGWCC 2 cut(s) 253, 317
BmgT120I GGNCC 2 cut(s) 253, 317
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 120, 312
BmsI GCATC 1 cut(s) 370
BsaJI CCNNGG 3 cut(s) 118, 119, 473
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 250
BseBI CCWGG 2 cut(s) 120, 312
BseDI CCNNGG 3 cut(s) 118, 119, 473
BseGI GGATG 3 cut(s) 37, 113, 451
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 59, 106
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 59, 106
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 118, 119, 473
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 120, 312
BstDEI CTNAG 1 cut(s) 355
BstDSI CCRYGG 1 cut(s) 473
BstF5I GGATG 3 cut(s) 37, 113, 451
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 120, 312
BstSCI CCNGG 2 cut(s) 118, 310
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 473
BtsCI GGATG 3 cut(s) 37, 113, 451
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 253, 317
CpoI CGGWCCG 1 cut(s) 253
Csp6I GTAC 2 cut(s) 189, 260
CspI CGGWCCG 1 cut(s) 253
CviAII CATG 2 cut(s) 73, 474
CviJI RGCY 3 cut(s) 10, 19, 94
CviKI_1 RGCY 3 cut(s) 10, 19, 94
CviQI GTAC 2 cut(s) 189, 260
DdeI CTNAG 1 cut(s) 355
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
DraI TTTAAA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 473
Eco147I AGGCCT 1 cut(s) 94
Eco32I GATATC 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 253, 317
EcoRII CCWGG 2 cut(s) 118, 310
EcoRV GATATC 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 2 cut(s) 76, 477
FaiI YATR 9 cut(s) 63, 74, 88, 90, 266, 278, 280, 455, 475
FaqI GGGAC 1 cut(s) 454
FatI CATG 2 cut(s) 72, 473
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 3 cut(s) 44, 100, 458
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 2 cut(s) 11, 96
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 364
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 39
Hin1II CATG 2 cut(s) 76, 477
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 2 cut(s) 125, 293
HpaII CCGG 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 104, 317
Hpy188III TCNNGA 2 cut(s) 251, 443
Hpy8I GTNNAC 2 cut(s) 104, 317
HpyAV CCTTC 2 cut(s) 22, 253
HpyCH4V TGCA 4 cut(s) 104, 172, 371, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 355
Hsp92II CATG 2 cut(s) 76, 477
HspAI GCGC 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 7 cut(s) 37, 105, 132, 264, 297, 324, 428
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 11, 96
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 2 cut(s) 59, 106
MluCI AATT 5 cut(s) 147, 334, 340, 348, 460
MnlI CCTC 2 cut(s) 18, 232
MroI TCCGGA 1 cut(s) 250
MseI TTAA 3 cut(s) 146, 330, 338
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 120, 312
MvaI CCWGG 2 cut(s) 120, 312
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 16
NcoI CCATGG 1 cut(s) 473
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 76, 477
NlaIV GGNNCC 1 cut(s) 319
PasI CCCWGGG 1 cut(s) 119
PceI AGGCCT 1 cut(s) 94
PfeI GAWTC 2 cut(s) 125, 293
PkrI GCNGC 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 118, 310
PspGI CCWGG 2 cut(s) 118, 310
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 2 cut(s) 253, 317
PsrI GAACNNNNNNTAC 2 cut(s) 181, 213
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 2 cut(s) 190, 261
RsaNI GTAC 2 cut(s) 189, 260
Rsr2I CGGWCCG 1 cut(s) 253
RsrII CGGWCCG 1 cut(s) 253
SaqAI TTAA 3 cut(s) 146, 330, 338
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 2 cut(s) 253, 317
ScrFI CCNGG 2 cut(s) 120, 312
SduI GDGCHC 2 cut(s) 59, 106
SetI ASST 2 cut(s) 12, 245
SfaNI GCATC 1 cut(s) 370
SinI GGWCC 2 cut(s) 253, 317
SmiI ATTTAAAT 1 cut(s) 339
Sse9I AATT 5 cut(s) 147, 334, 340, 348, 460
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 1 cut(s) 256
SspI AATATT 1 cut(s) 491
SspMI CTAG 2 cut(s) 11, 96
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 118, 310
StyI CCWWGG 1 cut(s) 473
SwaI ATTTAAAT 1 cut(s) 339
TasI AATT 5 cut(s) 147, 334, 340, 348, 460
TfiI GAWTC 2 cut(s) 125, 293
Tru1I TTAA 3 cut(s) 146, 330, 338
Tru9I TTAA 3 cut(s) 146, 330, 338
TseI GCWGC 1 cut(s) 363
TspDTI ATGAA 4 cut(s) 61, 148, 285, 420
VneI GTGCAC 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 253, 317
XapI RAATTY 2 cut(s) 334, 340
XspI CTAG 2 cut(s) 11, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.