Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

57469427 .. 57470592

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG258800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCCCCACCCAGCGACGGAGCTCCACGTGCCGTAACCAAAATCCCCGGCGATGGAATCAGACCGCTAGTCACGAACGCTGTCCAGAAGGTGATGGAGGCGATGCAGGCGCCGGTCTACTTCGAGAAGTACGATGTCACCGGCGACATGCCGAGGGTGCCGGAGGAGGTGATTGAGTCGATCAGGAAGAACAAGATGTGTCTGAAAGGCGGGCTGGCGACGCCGATGGGCGGCGGCGTTAGCTCGCTGAACATGCAACTCCGGCGAGATCTCGATCTCGATCTCTATGCTTCGTTGGTCAACTGCTTCAATCTGCATGGCTTACAGACCAAGCATGGCAACGTCGACATTCTAGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCACGAGATCATTCCTGGAGTTGTTGAAAGCCTTAAAGTTAGATGGCTTTACATATCTGACCAGGTGTGGGATAGGATCGCTCTAGGTCTAGCCTCTCAGTATGGAGTATGCTTACTACATATTCAAATCTTGCCTCGTAATAGAAGATCTGCTGCTACAGAGAAGGTGGAAGATATAGGTAACTTGAAAACTGAGCAGCATAAAAGGAAACAACATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

205

Amino Acids

22.82

Weight (kDa)

7.01

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	12 - 157	1e-17	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 157
AccI	GTMKAC	2 cut(s)	117, 345
AciI	CCGC	4 cut(s)	65, 210, 231, 234
AclWI	GGATC	1 cut(s)	479
AcvI	CACGTG	1 cut(s)	29
AcyI	GRCGYC	2 cut(s)	110, 221
AfaI	GTAC	2 cut(s)	131, 383
AfiI	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 463
AgsI	TTSAA	4 cut(s)	310, 422, 521, 583
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	409, 456
AluBI	AGCT	2 cut(s)	23, 243
AluI	AGCT	2 cut(s)	23, 243
Alw21I	GWGCWC	2 cut(s)	25, 399
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	2 cut(s)	385, 392
ApeKI	GCWGC	2 cut(s)	548, 592
AspLEI	GCGC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	4 cut(s)	103, 130, 181, 389
AvaI	CYCGRG	2 cut(s)	385, 392
BanI	GGYRCC	2 cut(s)	109, 157
BanII	GRGCYC	2 cut(s)	25, 393
BauI	CACGAG	1 cut(s)	398
BbrPI	CACGTG	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	25, 399
BbvI	GCAGC	2 cut(s)	535, 604
BccI	CCATC	4 cut(s)	47, 88, 220, 432
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	411, 458
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	4 cut(s)	68, 353, 479, 485
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	2 cut(s)	268, 542
BisI	GCNGC	4 cut(s)	232, 235, 549, 593
BlsI	GCNGC	4 cut(s)	233, 236, 550, 594
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	48, 411, 458
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmeT110I	CYCGRG	2 cut(s)	385, 392
BmiI	GGNNCC	2 cut(s)	111, 159
BmrFI	CCNGG	3 cut(s)	48, 411, 458
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	2 cut(s)	273, 279
BsaHI	GRCGYC	2 cut(s)	110, 221
BsaJI	CCNNGG	3 cut(s)	46, 152, 372
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 463
Bse118I	RCCGGY	2 cut(s)	112, 140
Bse8I	GATNNNNATC	2 cut(s)	273, 279
BseBI	CCWGG	2 cut(s)	411, 458
BseDI	CCNNGG	3 cut(s)	46, 152, 372
BseJI	GATNNNNATC	2 cut(s)	273, 279
BseLI	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 463
BseMII	CTCAG	2 cut(s)	506, 579
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	535, 604
BseYI	CCCAGC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	109, 157
BsiHKAI	GWGCWC	2 cut(s)	25, 399
BsiHKCI	CYCGRG	2 cut(s)	385, 392
BsiSI	CCGG	5 cut(s)	48, 113, 141, 161, 262
BslI	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 463
BsoBI	CYCGRG	2 cut(s)	385, 392
Bsp1286I	GDGCHC	3 cut(s)	25, 393, 399
Bsp143I	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
BspACI	CCGC	4 cut(s)	65, 210, 231, 234
BspCNI	CTCAG	2 cut(s)	505, 580
BspLI	GGNNCC	2 cut(s)	111, 159
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	109, 157
BsrFI	RCCGGY	2 cut(s)	112, 140
BssAI	RCCGGY	2 cut(s)	112, 140
BssECI	CCNNGG	3 cut(s)	46, 152, 372
BssMI	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
BssNI	GRCGYC	2 cut(s)	110, 221
BssSI	CACGAG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	411, 458
BstACI	GRCGYC	2 cut(s)	110, 221
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	4 cut(s)	108, 212, 216, 245
BstDEI	CTNAG	2 cut(s)	492, 588
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	8 cut(s)	183, 271, 277, 283, 360, 405, 474, 545
BstMBI	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 107, 157, 220, 240, 253, 262
BstNI	CCWGG	2 cut(s)	411, 458
BstNSI	RCATGY	2 cut(s)	151, 256
BstSCI	CCNGG	3 cut(s)	46, 409, 456
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	535, 604
BstX2I	RGATCY	2 cut(s)	268, 542
BstYI	RGATCY	2 cut(s)	268, 542
BtgZI	GCGATG	2 cut(s)	66, 116
Cac8I	GCNNGC	4 cut(s)	108, 212, 216, 245
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	112, 140
CseI	GACGC	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	130, 382
CviAII	CATG	5 cut(s)	148, 253, 317, 335, 611
CviJI	RGCY	8 cut(s)	23, 214, 243, 321, 391, 426, 442, 488
CviKI_1	RGCY	8 cut(s)	23, 214, 243, 321, 391, 426, 442, 488
CviQI	GTAC	2 cut(s)	130, 382
DdeI	CTNAG	2 cut(s)	492, 588
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	8 cut(s)	182, 270, 276, 282, 359, 404, 473, 544
DpnII	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	25, 393
Eco53kI	GAGCTC	1 cut(s)	23
Eco72I	CACGTG	1 cut(s)	29
Eco88I	CYCGRG	2 cut(s)	385, 392
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	409, 456
EcoT38I	GRGCYC	2 cut(s)	25, 393
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
FaeI	CATG	5 cut(s)	151, 256, 320, 338, 614
FatI	CATG	5 cut(s)	147, 252, 316, 334, 610
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	2 cut(s)	117, 345
Fnu4HI	GCNGC	4 cut(s)	232, 235, 549, 593
FriOI	GRGCYC	2 cut(s)	25, 393
Fsp4HI	GCNGC	4 cut(s)	232, 235, 549, 593
FspBI	CTAG	4 cut(s)	68, 353, 479, 485
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	4 cut(s)	232, 235, 549, 593
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	5 cut(s)	48, 113, 141, 161, 262
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 221
Hin1II	CATG	5 cut(s)	151, 256, 320, 338, 614
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	301, 346
HindII	GTYRAC	2 cut(s)	301, 346
HinfI	GANTC	2 cut(s)	57, 176
HpaII	CCGG	5 cut(s)	48, 113, 141, 161, 262
HphI	GGTGA	4 cut(s)	103, 130, 181, 389
Hpy166II	GTNNAC	3 cut(s)	118, 301, 346
Hpy188I	TCNGA	3 cut(s)	62, 204, 454
Hpy188III	TCNNGA	6 cut(s)	73, 85, 124, 184, 272, 278
Hpy8I	GTNNAC	3 cut(s)	118, 301, 346
Hpy99I	CGWCG	3 cut(s)	20, 223, 347
HpyAV	CCTTC	2 cut(s)	82, 553
HpyCH4IV	ACGT	2 cut(s)	28, 342
HpyCH4V	TGCA	3 cut(s)	106, 256, 316
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 107, 157, 220, 240, 253, 262
HpyF3I	CTNAG	2 cut(s)	492, 588
HpySE526I	ACGT	2 cut(s)	28, 342
Hsp92I	GRCGYC	2 cut(s)	110, 221
Hsp92II	CATG	5 cut(s)	151, 256, 320, 338, 614
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
LmnI	GCTCC	2 cut(s)	20, 28
Lsp1109I	GCAGC	2 cut(s)	535, 604
LweI	GCATC	1 cut(s)	93
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	4 cut(s)	68, 353, 479, 485
MaeII	ACGT	2 cut(s)	28, 342
MaeIII	GTNAC	4 cut(s)	34, 70, 136, 575
MalI	GATC	8 cut(s)	182, 270, 276, 282, 359, 404, 473, 544
MboI	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
MboII	GAAGA	3 cut(s)	199, 552, 578
MflI	RGATCY	2 cut(s)	268, 542
MhlI	GDGCHC	3 cut(s)	25, 393, 399
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	7 cut(s)	91, 147, 157, 160, 367, 499, 540
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	5 cut(s)	48, 113, 141, 161, 262
MspR9I	CCNGG	3 cut(s)	48, 411, 458
MvaI	CCWGG	2 cut(s)	411, 458
MwoI	GCNNNNNNNGC	7 cut(s)	29, 107, 157, 220, 240, 253, 262
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
NlaIII	CATG	5 cut(s)	151, 256, 320, 338, 614
NlaIV	GGNNCC	2 cut(s)	111, 159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	70, 136
NspI	RCATGY	2 cut(s)	151, 256
PaeR7I	CTCGAG	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	233, 236, 550, 594
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	409, 456
PspCI	CACGTG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	409, 456
PspN4I	GGNNCC	2 cut(s)	111, 159
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	268, 542
RsaI	GTAC	2 cut(s)	131, 383
RsaNI	GTAC	2 cut(s)	130, 382
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	4 cut(s)	232, 235, 549, 593
Sau3AI	GATC	8 cut(s)	180, 268, 274, 280, 357, 402, 471, 542
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	48, 411, 458
SduI	GDGCHC	3 cut(s)	25, 393, 399
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	552
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	392
SgrAI	CRCCGGYG	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SsiI	CCGC	4 cut(s)	65, 210, 231, 234
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	4 cut(s)	68, 353, 479, 485
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	46, 409, 456
TaiI	ACGT	2 cut(s)	31, 345
TaqI	TCGA	6 cut(s)	123, 179, 273, 279, 345, 393
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	70, 136
TseI	GCWGC	2 cut(s)	548, 592
Tsp45I	GTSAC	2 cut(s)	70, 136
TspGWI	ACGGA	1 cut(s)	33
XceI	RCATGY	2 cut(s)	151, 256
XhoI	CTCGAG	1 cut(s)	392
XmiI	GTMKAC	2 cut(s)	117, 345
XspI	CTAG	4 cut(s)	68, 353, 479, 485
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.