RLG00000013432

ABC transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000567
Physical Location & Seq
Reverse (-)
31450332 .. 31451335
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013432

Sequence Viewer

Length: 312 bp
ATGCCTAGACCCAACGACGGAGCTCCGAGTGCCCAAAACATAATCCCCGGTGACGGAATTGGACCGCTCGTAATGAACGCCGTCGAGCAGGTGATCGAGTACCTCGATCTGTTTGGTTTTGATGCAATTTATCAATGGTTAGTTCTTCGTTATCTCAGTAGGTCTACCTGTGATTCATCATTTGGTTATCCTGGTGGACCCCTTTTGTTTAAGAATTTAAATTTTGGAATTGACTTAGACAGCAGCATTGCAAGTAAGGATGCTTCTCCATTTGAACTTTTAGTAAGGATGCTTCTCCATTTGAACTTTTAG

Protein Analysis

104

Amino Acids

11.37

Weight (kDa)

4.43

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 164
AciI CCGC 1 cut(s) 65
AcsI RAATTY 2 cut(s) 214, 220
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 17, 53
AgsI TTSAA 2 cut(s) 275, 304
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 2 cut(s) 214, 220
AspS9I GGNCC 2 cut(s) 62, 197
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 62, 103
AvaII GGWCC 2 cut(s) 62, 197
BaeGI GKGCMC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 25
BarI GAAGNNNNNNTAC 4 cut(s) 247, 276, 279, 308
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 255
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 192
BcnI CCSGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 48, 192
Bme18I GGWCC 2 cut(s) 62, 197
BmgT120I GGNCC 2 cut(s) 62, 197
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 48, 192
BmsI GCATC 3 cut(s) 112, 250, 279
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 53
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 265, 294
BseLI CCNNNNNNNGG 2 cut(s) 17, 53
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 17, 53
Bsp1286I GDGCHC 2 cut(s) 25, 34
Bsp143I GATC 2 cut(s) 93, 106
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 93, 106
Bst2UI CCWGG 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 155, 235
BstF5I GGATG 2 cut(s) 265, 294
BstKTI GATC 2 cut(s) 96, 109
BstMBI GATC 2 cut(s) 93, 106
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 46, 190
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 265, 294
BveI ACCTGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 62, 197
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 155, 235
DpnI GATC 2 cut(s) 95, 108
DpnII GATC 2 cut(s) 93, 106
DraI TTTAAA 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 62, 197
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 25
FaiI YATR 1 cut(s) 41
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 2 cut(s) 272, 301
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 244
HapII CCGG 1 cut(s) 48
HinfI GANTC 1 cut(s) 173
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 62, 103
Hpy166II GTNNAC 2 cut(s) 165, 197
Hpy188I TCNGA 1 cut(s) 27
Hpy8I GTNNAC 2 cut(s) 165, 197
Hpy99I CGWCG 2 cut(s) 20, 86
HpyCH4V TGCA 2 cut(s) 125, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 155, 235
Kzo9I GATC 2 cut(s) 93, 106
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 5 cut(s) 61, 74, 177, 181, 204
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 3 cut(s) 112, 250, 279
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 50
MalI GATC 2 cut(s) 95, 108
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 93, 106
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 25, 34
MluCI AATT 5 cut(s) 57, 126, 214, 220, 228
MnlI CCTC 1 cut(s) 113
MseI TTAA 2 cut(s) 210, 218
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 48, 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 48
NdeII GATC 2 cut(s) 93, 106
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 50
PaqCI CACCTGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 62, 197
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 210, 218
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 93, 106
Sau96I GGNCC 2 cut(s) 62, 197
ScrFI CCNGG 2 cut(s) 48, 192
SduI GDGCHC 2 cut(s) 25, 34
SetI ASST 5 cut(s) 25, 93, 105, 164, 170
SfaNI GCATC 3 cut(s) 112, 250, 279
SinI GGWCC 2 cut(s) 62, 197
SmiI ATTTAAAT 1 cut(s) 219
Sse9I AATT 5 cut(s) 57, 126, 214, 220, 228
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 46, 190
SwaI ATTTAAAT 1 cut(s) 219
TaqI TCGA 3 cut(s) 84, 96, 105
TasI AATT 5 cut(s) 57, 126, 214, 220, 228
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 210, 218
Tru9I TTAA 2 cut(s) 210, 218
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 89, 165
TspGWI ACGGA 2 cut(s) 33, 69
VpaK11BI GGWCC 2 cut(s) 62, 197
XapI RAATTY 2 cut(s) 214, 220
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.