Rh1BG010200

Isocitrate dehydrogenase NAD regulatory subunit 1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
1198706 .. 1198885
180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG010200.1

Sequence Viewer

Length: 180 bp
ATGCCCCCACCCGGCGACGGAGCTCCGCGTGCCGTAACCAAAATCCTTGGCGACAGAATCGGACCGCTCGTCACGAACGCCGTCGAGAAGGTGATGGAGGCGATGCACGCGCCAGTTTACTTGGAGAAGTACGATGTCACAGGCGAGATGCCGAGGGTGCCGGAGGAGGTGATTGAGTAG

Protein Analysis

59

Amino Acids

6.42

Weight (kDa)

4.8

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 2 cut(s) 28, 110
AciI CCGC 2 cut(s) 26, 65
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 11, 17
AhdI GACNNNNNGTC 1 cut(s) 68
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 88
BceAI ACGGC 2 cut(s) 17, 65
BcnI CCSGG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 62
BmeRI GACNNNNNGTC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 93, 138
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 46, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 17
Bse1I ACTGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 46, 152
BseLI CCNNNNNNNGG 2 cut(s) 11, 17
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 179
Bsh1236I CGCG 2 cut(s) 28, 110
BshNI GGYRCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 12, 161
BslI CCNNNNNNNGG 2 cut(s) 11, 17
Bsp1286I GDGCHC 1 cut(s) 25
BspACI CCGC 2 cut(s) 26, 65
BspFNI CGCG 2 cut(s) 28, 110
BspLI GGNNCC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 157
BsrBI CCGCTC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 46, 152
BssT1I CCWWGG 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 30, 108
BstFNI CGCG 2 cut(s) 28, 110
BstHHI GCGC 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 29, 107, 157
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 2 cut(s) 28, 110
BtgZI GCGATG 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 30, 108
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 62
CpoI CGGWCCG 1 cut(s) 62
Csp6I GTAC 1 cut(s) 130
CspI CGGWCCG 1 cut(s) 62
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 130
DriI GACNNNNNGTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 25
GlaI GCGC 1 cut(s) 111
HapII CCGG 2 cut(s) 12, 161
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 57
HpaII CCGG 2 cut(s) 12, 161
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 73, 85
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 20, 86
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 107, 157
HspAI GCGC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 4 cut(s) 25, 126, 126, 174
LweI GCATC 2 cut(s) 93, 138
MaeIII GTNAC 3 cut(s) 34, 70, 136
MbiI CCGCTC 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 25
MnlI CCTC 4 cut(s) 91, 147, 157, 160
MspI CCGG 2 cut(s) 12, 161
MspR9I CCNGG 1 cut(s) 12
MvnI CGCG 2 cut(s) 28, 110
MwoI GCNNNNNNNGC 3 cut(s) 29, 107, 157
NciI CCSGG 1 cut(s) 12
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 70, 136
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
Rsr2I CGGWCCG 1 cut(s) 62
RsrII CGGWCCG 1 cut(s) 62
SacI GAGCTC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 25
SetI ASST 3 cut(s) 25, 93, 171
SfaNI GCATC 2 cut(s) 93, 138
SinI GGWCC 1 cut(s) 62
SsiI CCGC 2 cut(s) 26, 65
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 1 cut(s) 84
TfiI GAWTC 1 cut(s) 57
TseFI GTSAC 2 cut(s) 70, 136
Tsp45I GTSAC 2 cut(s) 70, 136
TspGWI ACGGA 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.