Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

63087230 .. 63087715

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCCCCACCCAGCGACGAAGCACTGCGTGCCGTAACCAAAATCCCCGGCAATGGAATCGGACCGCTAGTCACGAATGCTGTCGAGAAGGTGATGGAGGCGATGCAGGCGCCGGTCTACTTCGAGAAGTACGATGTCACCGGCAACATGCCGAGGGTGCCAGAGGAGGTGATTGAGTCGATCAGGAAGAACAAGATGTGTTTGAAAGGCGGGCTGGAGACGCCAATGGGCGGGGGCGTTAGCTCGCTGAACATGCAGCTCCAGCGAGATCTCGATCTCTATGCTTCGTTGGTCAACTACTTCAATCTGCGTGGCTTACAGACCAAGCATGGCTTACAGACCAAGCATGGCAACGTCGACATTCTGGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCACGAGATCATTCCTAGAGTTGTTGAAAGCCTTAAAGGTATAAACAATGCAATTCCAAAATGTAAAATTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

161

Amino Acids

17.82

Weight (kDa)

6.43

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	12 - 142	1.5e-20	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 157
AccI	GTMKAC	2 cut(s)	117, 357
AciI	CCGC	3 cut(s)	65, 210, 231
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	110, 221
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	131, 395
AfiI	CCNNNNNNNGG	2 cut(s)	53, 230
AgsI	TTSAA	3 cut(s)	205, 304, 434
AhdI	GACNNNNNGTC	1 cut(s)	68
AluBI	AGCT	2 cut(s)	243, 259
AluI	AGCT	2 cut(s)	243, 259
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	212
Ama87I	CYCGRG	2 cut(s)	397, 404
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	5 cut(s)	103, 130, 181, 379, 401
AvaI	CYCGRG	2 cut(s)	397, 404
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	109, 157
BanII	GRGCYC	1 cut(s)	405
BauI	CACGAG	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	4 cut(s)	40, 74, 263, 297
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	68, 423
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmeT110I	CYCGRG	2 cut(s)	397, 404
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	111, 159
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	2 cut(s)	236, 245
BpuMI	CCSGG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	110, 221
BsaJI	CCNNGG	3 cut(s)	46, 152, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 230
Bse118I	RCCGGY	2 cut(s)	112, 140
Bse3DI	GCAATG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	46, 152, 384
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	53, 230
BseMI	GCAATG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	109, 157
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	2 cut(s)	397, 404
BsiSI	CCGG	3 cut(s)	48, 113, 141
BslI	CCNNNNNNNGG	2 cut(s)	53, 230
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	82
BsoBI	CYCGRG	2 cut(s)	397, 404
Bsp1286I	GDGCHC	2 cut(s)	405, 411
Bsp143I	GATC	5 cut(s)	180, 268, 274, 369, 414
BspACI	CCGC	3 cut(s)	65, 210, 231
BspLI	GGNNCC	2 cut(s)	111, 159
BspT107I	GGYRCC	2 cut(s)	109, 157
BsrDI	GCAATG	1 cut(s)	58
BsrFI	RCCGGY	2 cut(s)	112, 140
BssAI	RCCGGY	2 cut(s)	112, 140
BssECI	CCNNGG	3 cut(s)	46, 152, 384
BssMI	GATC	5 cut(s)	180, 268, 274, 369, 414
BssNI	GRCGYC	2 cut(s)	110, 221
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
BstACI	GRCGYC	2 cut(s)	110, 221
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	4 cut(s)	30, 108, 212, 245
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	5 cut(s)	183, 271, 277, 372, 417
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	5 cut(s)	180, 268, 274, 369, 414
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 107, 157, 220, 253, 262
BstNSI	RCATGY	2 cut(s)	151, 256
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	116
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	4 cut(s)	30, 108, 212, 245
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	112, 140
Cfr13I	GGNCC	1 cut(s)	62
CpoI	CGGWCCG	1 cut(s)	62
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	130, 394
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CspI	CGGWCCG	1 cut(s)	62
CviAII	CATG	4 cut(s)	148, 253, 329, 347
CviJI	RGCY	7 cut(s)	214, 243, 259, 315, 333, 403, 438
CviKI_1	RGCY	7 cut(s)	214, 243, 259, 315, 333, 403, 438
CviQI	GTAC	2 cut(s)	130, 394
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	5 cut(s)	182, 270, 276, 371, 416
DpnII	GATC	5 cut(s)	180, 268, 274, 369, 414
DraIII	CACNNNGTG	1 cut(s)	29
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	62
Eco88I	CYCGRG	2 cut(s)	397, 404
EcoT38I	GRGCYC	1 cut(s)	405
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	4 cut(s)	151, 256, 332, 350
FaiI	YATR	6 cut(s)	149, 254, 282, 330, 348, 449
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	4 cut(s)	147, 252, 328, 346
FauI	CCCGC	2 cut(s)	203, 224
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	117, 357
Fnu4HI	GCNGC	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	2 cut(s)	68, 423
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	257
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	2 cut(s)	236, 245
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	3 cut(s)	48, 113, 141
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 221
Hin1II	CATG	4 cut(s)	151, 256, 332, 350
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	295, 358
HindII	GTYRAC	2 cut(s)	295, 358
HinfI	GANTC	2 cut(s)	57, 176
HpaII	CCGG	3 cut(s)	48, 113, 141
HphI	GGTGA	5 cut(s)	103, 130, 181, 379, 401
Hpy166II	GTNNAC	3 cut(s)	118, 295, 358
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	5 cut(s)	73, 85, 124, 184, 272
Hpy8I	GTNNAC	3 cut(s)	118, 295, 358
Hpy99I	CGWCG	2 cut(s)	20, 359
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	106, 256, 458
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 107, 157, 220, 253, 262
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	2 cut(s)	110, 221
Hsp92II	CATG	4 cut(s)	151, 256, 332, 350
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	5 cut(s)	180, 268, 274, 369, 414
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	68, 423
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	34, 70, 136
MalI	GATC	5 cut(s)	182, 270, 276, 371, 416
MboI	GATC	5 cut(s)	180, 268, 274, 369, 414
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	405, 411
MluCI	AATT	2 cut(s)	459, 474
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	91, 147, 157, 160, 379
MseI	TTAA	2 cut(s)	441, 484
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	3 cut(s)	48, 113, 141
MspR9I	CCNGG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	6 cut(s)	29, 107, 157, 220, 253, 262
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	180, 268, 274, 369, 414
NlaIII	CATG	4 cut(s)	151, 256, 332, 350
NlaIV	GGNNCC	2 cut(s)	111, 159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	70, 136
NspI	RCATGY	2 cut(s)	151, 256
PaeR7I	CTCGAG	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	111, 159
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	131, 395
RsaNI	GTAC	2 cut(s)	130, 394
RseI	CAYNNNNRTG	1 cut(s)	365
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	441, 484
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	5 cut(s)	180, 268, 274, 369, 414
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	405, 411
SetI	ASST	6 cut(s)	93, 171, 245, 261, 357, 448
SfaNI	GCATC	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	459, 474
SsiI	CCGC	3 cut(s)	65, 210, 231
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	68, 423
StyD4I	CCNGG	1 cut(s)	46
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	6 cut(s)	84, 123, 179, 273, 357, 405
TasI	AATT	2 cut(s)	459, 474
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	441, 484
Tru9I	TTAA	2 cut(s)	441, 484
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	70, 136
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	70, 136
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	2 cut(s)	151, 256
XhoI	CTCGAG	1 cut(s)	404
XmiI	GTMKAC	2 cut(s)	117, 357
XspI	CTAG	2 cut(s)	68, 423
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.