Rorug01G0401400

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000567
Physical Location & Seq
Reverse (-)
50948928 .. 50949736
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0401400.1

Sequence Viewer

Length: 228 bp
ATGGGAAATGTTGTGGAATTGAAGGTGGGCTTGCACTGTGAGGAATGCATCAAGAAAATCCTGAAGGCCATCAAGAAGATCGAAGATATCGAAACATATAATGTGGACACAGAGCTGAACAAGGTGATTGTGACTGGTAATGTTACTACAGAACAAGTCATCAGAGCTCTTCAGAAGATTAAGAAGAATGCAATCCCTTGGGGCCAGGAAGACGAAGCAACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

5.79

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 8 - 62 1.4e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 83, 155
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 2 cut(s) 115, 167
AluI AGCT 2 cut(s) 115, 167
Alw21I GWGCWC 1 cut(s) 169
AoxI GGCC 2 cut(s) 66, 202
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 136
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 169
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 2 cut(s) 68, 204
BsiHKAI GWGCWC 1 cut(s) 169
BsmI GAATGC 2 cut(s) 50, 193
BsnI GGCC 2 cut(s) 68, 204
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 78
BspANI GGCC 2 cut(s) 68, 204
BspLI GGNNCC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 216
BsuRI GGCC 2 cut(s) 68, 204
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 202
CviJI RGCY 5 cut(s) 30, 68, 115, 167, 204
CviKI_1 RGCY 5 cut(s) 30, 68, 115, 167, 204
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 83, 155
EcoICRI GAGCTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 197
FaiI YATR 2 cut(s) 97, 99
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FriOI GRGCYC 1 cut(s) 169
HaeIII GGCC 2 cut(s) 68, 204
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 164, 174
Hpy188III TCNNGA 4 cut(s) 52, 61, 73, 225
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 16, 58
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 34, 48, 191
Kzo9I GATC 1 cut(s) 78
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 4 cut(s) 74, 120, 191, 218
LweI GCATC 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 130, 142
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 6 cut(s) 88, 95, 161, 187, 196, 221
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 1 cut(s) 17
MnlI CCTC 1 cut(s) 34
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 50, 193
MvaI CCWGG 1 cut(s) 206
NdeII GATC 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 2 cut(s) 50, 193
Psp124BI GAGCTC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 169
SetI ASST 4 cut(s) 27, 117, 126, 169
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 147
Sse9I AATT 1 cut(s) 17
SstI GAGCTC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 81, 90
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspRI CASTG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.