Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

1198931 .. 1225992

Gene Structure 27062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGCAACGGCGTTAGCTCGCTGAACATGAAGCTCTGGCGAGATCTCGATCTCTATGCTTCGTTGGTCAACTGCTTCAATATGCGTGGCTTACAGACCAGGCATGACAACGTCGACATTGTGGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCACGAGATCATTCCTGGAGTTGTTGAAAGCCATAAAGGTATAAACAATCAGCAAAGGAAGCAACATGGACAAGAGTCCAAGGAGGAGAAGAAAGAGAGGAAGGAGGAAAGACGTGAGGCATGGCACGCTAAAAAGAAATTGAAGGGACTTTACAAGGGTGAAGGGCAACATTCTCAGAGAGTAGCTGCAATATCTGGCTCTTCTTCCAAACGTTTGGTGAAACTAAGAGTGCATTGGATTTTTGTCAAGAAGTGTGGCATCCCCTTAACTTTCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

148

Amino Acids

17.05

Weight (kDa)

9.69

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	7 - 71	1.7e-08	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AclI	AACGTT	1 cut(s)	376
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	79, 191, 307
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	98, 178
AluBI	AGCT	3 cut(s)	18, 34, 350
AluI	AGCT	3 cut(s)	18, 34, 350
Alw21I	GWGCWC	1 cut(s)	168
Ama87I	CYCGRG	2 cut(s)	154, 161
ApeKI	GCWGC	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	136, 158, 335, 394
AvaI	CYCGRG	2 cut(s)	154, 161
BanII	GRGCYC	1 cut(s)	162
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	2 cut(s)	100, 180
BclI	TGATCA	1 cut(s)	126
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	100, 180
BmeT110I	CYCGRG	2 cut(s)	154, 161
BmgBI	CACGTC	1 cut(s)	278
BmrFI	CCNGG	2 cut(s)	100, 180
BmsI	GCATC	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	141, 243
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	100, 180
BseDI	CCNNGG	2 cut(s)	141, 243
BseGI	GGATG	1 cut(s)	423
BseJI	GATNNNNATC	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	2 cut(s)	154, 161
BslFI	GGGAC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	324
BsoBI	CYCGRG	2 cut(s)	154, 161
Bsp1286I	GDGCHC	2 cut(s)	162, 168
Bsp143I	GATC	4 cut(s)	43, 49, 126, 171
BspCNI	CTCAG	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	141, 243
BssMI	GATC	4 cut(s)	43, 49, 126, 171
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	100, 180
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	20, 291
BstDEI	CTNAG	2 cut(s)	339, 389
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	4 cut(s)	46, 52, 129, 174
BstMBI	GATC	4 cut(s)	43, 49, 126, 171
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 290
BstNI	CCWGG	2 cut(s)	100, 180
BstPAI	GACNNNNGTC	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	98, 178
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	20, 291
Csp6I	GTAC	1 cut(s)	151
CspCI	CAANNNNNGTGG	4 cut(s)	67, 102, 400, 435
CviAII	CATG	5 cut(s)	28, 104, 230, 285, 439
CviJI	RGCY	7 cut(s)	18, 34, 90, 160, 195, 350, 363
CviKI_1	RGCY	7 cut(s)	18, 34, 90, 160, 195, 350, 363
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	339, 389
DpnI	GATC	4 cut(s)	45, 51, 128, 173
DpnII	GATC	4 cut(s)	43, 49, 126, 171
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	162
Eco88I	CYCGRG	2 cut(s)	154, 161
EcoRII	CCWGG	2 cut(s)	98, 178
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	31, 107, 233, 288, 442
FaiI	YATR	9 cut(s)	29, 57, 83, 105, 198, 206, 231, 286, 440
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	5 cut(s)	27, 103, 229, 284, 438
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	201
Hin1II	CATG	5 cut(s)	31, 107, 233, 288, 442
HincII	GTYRAC	2 cut(s)	70, 115
HindII	GTYRAC	2 cut(s)	70, 115
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	4 cut(s)	136, 158, 335, 394
Hpy166II	GTNNAC	2 cut(s)	70, 115
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	47, 412
Hpy8I	GTNNAC	2 cut(s)	70, 115
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	259, 301, 320
HpyCH4IV	ACGT	3 cut(s)	111, 277, 376
HpyCH4V	TGCA	2 cut(s)	353, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 290
HpyF3I	CTNAG	2 cut(s)	339, 389
HpySE526I	ACGT	3 cut(s)	111, 277, 376
Hsp92II	CATG	5 cut(s)	31, 107, 233, 288, 442
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	43, 49, 126, 171
LguI	GCTCTTC	1 cut(s)	370
LpnPI	CCDG	7 cut(s)	22, 85, 112, 115, 165, 192, 345
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	3 cut(s)	111, 277, 376
MalI	GATC	4 cut(s)	45, 51, 128, 173
MboI	GATC	4 cut(s)	43, 49, 126, 171
MboII	GAAGA	3 cut(s)	265, 357, 360
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	162, 168
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	5 cut(s)	136, 241, 255, 262, 274
MseI	TTAA	1 cut(s)	431
MslI	CAYNNNNRTG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	100, 180
MvaI	CCWGG	2 cut(s)	100, 180
MwoI	GCNNNNNNNGC	2 cut(s)	223, 290
NdeII	GATC	4 cut(s)	43, 49, 126, 171
NlaIII	CATG	5 cut(s)	31, 107, 233, 288, 442
PaeR7I	CTCGAG	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	370
PflFI	GACNNNGTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	238
Psp1406I	AACGTT	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	98, 178
PspGI	CCWGG	2 cut(s)	98, 178
PspXI	VCTCGAGB	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	4 cut(s)	43, 49, 126, 171
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	100, 180
SduI	GDGCHC	2 cut(s)	162, 168
SetI	ASST	7 cut(s)	20, 36, 114, 205, 280, 352, 379
SfaNI	GCATC	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	98, 178
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	3 cut(s)	114, 280, 379
TaqI	TCGA	3 cut(s)	48, 114, 162
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	44, 427
Tth111I	GACNNNGTC	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.