Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

11915869 .. 11916105

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCCCCCACCCAGCGACGGAGCTCTGCGTGTCGTAACCAAAATCCCTGGTGATGGAATCGGACCGCTAGTCACGAACGCTGTAGAGAAGGTGATGGAGGCGATGCAGGCGCCGGTCTACTTCGAGAAGTATGATGTCACCGGCAACATGCCGAGGGTTCCGGAGGAGGCGATTGAGTCGATCAGGAGGAACAAGATGTGTCTGAAAGGTGGGCTGGCGGCGGCGTTAGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

78

Amino Acids

8.37

Weight (kDa)

7.87

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	12 - 73	1.1e-06	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	3 cut(s)	65, 218, 221
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	17, 53
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	23, 230
AluI	AGCT	2 cut(s)	23, 230
Alw21I	GWGCWC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	62, 103, 130
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BccI	CCATC	2 cut(s)	47, 88
BciT130I	CCWGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	113
BisI	GCNGC	2 cut(s)	219, 222
BlsI	GCNGC	2 cut(s)	220, 223
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	111, 159
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	46, 152
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 53
Bse118I	RCCGGY	2 cut(s)	112, 140
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	46, 152
BseLI	CCNNNNNNNGG	2 cut(s)	17, 53
BseRI	GAGGAG	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	3 cut(s)	113, 141, 161
BslI	CCNNNNNNNGG	2 cut(s)	17, 53
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	3 cut(s)	65, 218, 221
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	111, 159
BspT107I	GGYRCC	1 cut(s)	109
BsrFI	RCCGGY	2 cut(s)	112, 140
BssAI	RCCGGY	2 cut(s)	112, 140
BssECI	CCNNGG	2 cut(s)	46, 152
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	108, 216, 232
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 227
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	108, 216, 232
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	112, 140
Cfr13I	GGNCC	1 cut(s)	62
CpoI	CGGWCCG	1 cut(s)	62
CspI	CGGWCCG	1 cut(s)	62
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	3 cut(s)	23, 214, 230
CviKI_1	RGCY	3 cut(s)	23, 214, 230
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	25
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	132, 149
FatI	CATG	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	219, 222
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	219, 222
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	2 cut(s)	219, 222
GsaI	CCCAGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	3 cut(s)	113, 141, 161
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	57, 176
HpaII	CCGG	3 cut(s)	113, 141, 161
HphI	GGTGA	3 cut(s)	62, 103, 130
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	62, 204
Hpy188III	TCNNGA	4 cut(s)	73, 124, 161, 184
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 227
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	9 cut(s)	25, 33, 60, 92, 126, 154, 169, 174, 200
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	3 cut(s)	34, 70, 136
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	25
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	91, 147, 157, 160, 180
MroI	TCCGGA	1 cut(s)	160
MspI	CCGG	3 cut(s)	113, 141, 161
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	107, 227
NarI	GGCGCC	1 cut(s)	110
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	111, 159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	70, 136
NspI	RCATGY	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	220, 223
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	111, 159
PspPI	GGNCC	1 cut(s)	62
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	2 cut(s)	219, 222
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	4 cut(s)	25, 93, 211, 232
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	62
SsiI	CCGC	3 cut(s)	65, 218, 221
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	2 cut(s)	123, 179
TauI	GCSGC	2 cut(s)	221, 224
TfiI	GAWTC	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	70, 136
Tsp45I	GTSAC	2 cut(s)	70, 136
TspGWI	ACGGA	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.