Rorug05G0575000

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000567
Physical Location & Seq
Forward (+)
77059353 .. 77061226
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0575000.1

Sequence Viewer

Length: 951 bp
ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCTTGAAGTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGACAAAAGCCGAAACCCTTTCAGCTTCAAGGAAACTTTACAGCCTTCCACTTGAGACAAAGAAGAACAACCTTACCCCAAACCGTTACCAGGGTTACGTTGGACCGGGTGTCACTGCTCCCTTGTATGAAGGCTTTGGCTTTCAGGAAGCATCCAACTATGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCATGACCAGTTTTGCACTGTCCTTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTCACTTGATGATTCTTGATAGCTATGGTTTGGAAAAATCATCAAATTTGATCATGGTGTCTAAGACGGTGCTACGGTTACATAAGTACACGACACCTCCTTCAGGGGAGTACGCGATGGCTGCCTCGGCTCACACTGACAAGACTTTTAGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGACGAACAATGGGTCAAGTTGCCTATATCTCCTTGCTCTTTCATCTTTGTTGTTGGAGACTTCCTCATGGCATGGAGCAGTGGCAGAATGCATTCTGTGAAGCATCGGGTGATGATGTGTGGGGAAAAAGAACGACATTCCTTAATATCATCTGCACTTCCAATAGAGGGTTCCATCATCAAAGCACAAAAGGAGCTAGTAGATGAAGTCTACCCACAAATTCTTAAAGATTTCGACTATACAGAATTTTTCAACTTCATCTGTTCATCAGAAGGAAGAGCCATTGACTCACAAATGCAAGTTTACGCATTTGCTGGAATTGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

316

Amino Acids

35.93

Weight (kDa)

5.18

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 24 - 92 8.5e-12 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 164 - 256 1.3e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 831
AccII CGCG 1 cut(s) 536
AciI CCGC 1 cut(s) 161
AcsI RAATTY 5 cut(s) 38, 49, 466, 840, 866
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 3 cut(s) 86, 509, 533
AfiI CCNNNNNNNGG 4 cut(s) 28, 253, 524, 788
AgsI TTSAA 5 cut(s) 59, 192, 608, 614, 874
AhdI GACNNNNNGTC 1 cut(s) 272
AjnI CCWGG 1 cut(s) 252
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
AluBI AGCT 6 cut(s) 188, 339, 400, 409, 444, 817
AluI AGCT 6 cut(s) 188, 339, 400, 409, 444, 817
Alw26I GTCTC 3 cut(s) 212, 363, 672
ApeKI GCWGC 2 cut(s) 397, 542
ApoI RAATTY 5 cut(s) 38, 49, 466, 840, 866
ArsI GACNNNNNNTTYG 2 cut(s) 618, 650
Asp700I GAANNNNTTC 1 cut(s) 712
Asp718I GGTACC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 64, 266
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 742
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 2 cut(s) 64, 266
BanI GGYRCC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 409, 529
BccI CCATC 3 cut(s) 96, 532, 803
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 2 cut(s) 471, 589
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 3 cut(s) 212, 363, 672
BfaI CTAG 1 cut(s) 818
BisI GCNGC 2 cut(s) 398, 543
BlsI GCNGC 2 cut(s) 399, 544
Bme1390I CCNGG 2 cut(s) 254, 270
Bme18I GGWCC 2 cut(s) 64, 266
BmeRI GACNNNNNGTC 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 64, 266
BmiI GGNNCC 2 cut(s) 86, 793
BmrFI CCNGG 2 cut(s) 254, 270
BmsI GCATC 2 cut(s) 323, 733
BplI GAGNNNNNCTC 2 cut(s) 669, 701
Bpu14I TTCGAA 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 4 cut(s) 67, 253, 546, 618
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 253, 524, 788
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 4 cut(s) 67, 253, 546, 618
BseGI GGATG 2 cut(s) 314, 409
BseLI CCNNNNNNNGG 4 cut(s) 28, 253, 524, 788
BseNI ACTGG 1 cut(s) 367
BseXI GCAGC 2 cut(s) 409, 529
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 29, 269
BslI CCNNNNNNNGG 4 cut(s) 28, 253, 524, 788
BsmAI GTCTC 3 cut(s) 212, 363, 672
BsmI GAATGC 2 cut(s) 712, 714
Bso31I GGTCTC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 2 cut(s) 471, 589
BspACI CCGC 1 cut(s) 161
BspFNI CGCG 1 cut(s) 536
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 2 cut(s) 86, 793
BspQI GCTCTTC 1 cut(s) 892
BspT104I TTCGAA 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 363
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 4 cut(s) 67, 253, 546, 618
BssMI GATC 2 cut(s) 471, 589
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 4 cut(s) 248, 379, 490, 498
Bst6I CTCTTC 1 cut(s) 892
BstBI TTCGAA 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 332, 483
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 314, 409
BstFNI CGCG 1 cut(s) 536
BstKTI GATC 2 cut(s) 474, 592
BstMAI GTCTC 3 cut(s) 212, 363, 672
BstMBI GATC 2 cut(s) 471, 589
BstMWI GCNNNNNNNGC 3 cut(s) 406, 542, 548
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 252, 268
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 2 cut(s) 409, 529
BtgZI GCGATG 1 cut(s) 551
BtsCI GGATG 2 cut(s) 314, 409
BtsI GCAGTG 2 cut(s) 276, 706
BtsIMutI CAGTG 4 cut(s) 276, 375, 555, 706
CciI TCATGA 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 64, 266
Csp6I GTAC 3 cut(s) 85, 508, 532
CviAII CATG 4 cut(s) 362, 475, 688, 693
CviQI GTAC 3 cut(s) 85, 508, 532
DdeI CTNAG 2 cut(s) 332, 483
DpnI GATC 2 cut(s) 473, 591
DpnII GATC 2 cut(s) 471, 589
DriI GACNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 892
Eam1105I GACNNNNNGTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 892
Eco130I CCWWGG 1 cut(s) 618
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 64, 266
Eco57I CTGAAG 1 cut(s) 507
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoRI GAATTC 2 cut(s) 38, 49
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 4 cut(s) 365, 478, 691, 696
FatI CATG 4 cut(s) 361, 474, 687, 692
FbaI TGATCA 2 cut(s) 471, 589
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 2 cut(s) 398, 543
FokI GGATG 2 cut(s) 301, 416
Fsp4HI GCNGC 2 cut(s) 398, 543
FspBI CTAG 1 cut(s) 818
GluI GCNGC 2 cut(s) 398, 543
HapII CCGG 2 cut(s) 29, 269
Hin1II CATG 4 cut(s) 365, 478, 691, 696
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 6 cut(s) 11, 25, 326, 421, 433, 908
HpaII CCGG 2 cut(s) 29, 269
HphI GGTGA 1 cut(s) 742
Hpy166II GTNNAC 4 cut(s) 64, 510, 832, 925
Hpy188I TCNGA 2 cut(s) 10, 892
Hpy188III TCNNGA 5 cut(s) 107, 308, 362, 437, 605
Hpy8I GTNNAC 4 cut(s) 64, 510, 832, 925
HpyAV CCTTC 5 cut(s) 94, 218, 287, 531, 887
HpyCH4III ACNGT 4 cut(s) 248, 379, 490, 498
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 5 cut(s) 96, 375, 712, 776, 919
HpyF10VI GCNNNNNNNGC 3 cut(s) 406, 542, 548
HpyF3I CTNAG 2 cut(s) 332, 483
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 365, 478, 691, 696
KpnI GGTACC 1 cut(s) 88
Ksp22I TGATCA 2 cut(s) 471, 589
Kzo9I GATC 2 cut(s) 471, 589
LguI GCTCTTC 1 cut(s) 892
LmnI GCTCC 3 cut(s) 286, 696, 814
Lsp1109I GCAGC 2 cut(s) 409, 529
LweI GCATC 2 cut(s) 323, 733
MaeI CTAG 1 cut(s) 818
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 4 cut(s) 248, 257, 274, 498
MalI GATC 2 cut(s) 473, 591
MboI GATC 2 cut(s) 471, 589
MboII GAAGA 3 cut(s) 238, 359, 909
MluCI AATT 8 cut(s) 38, 49, 121, 138, 466, 840, 866, 939
MlyI GAGTC 1 cut(s) 902
MmeI TCCRAC 3 cut(s) 244, 342, 655
MnlI CCTC 7 cut(s) 62, 103, 168, 528, 556, 695, 781
Mph1103I ATGCAT 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 712
MseI TTAA 2 cut(s) 764, 846
MspA1I CMGCKG 1 cut(s) 400
MspI CCGG 2 cut(s) 29, 269
MspR9I CCNGG 2 cut(s) 254, 270
Mva1269I GAATGC 2 cut(s) 712, 714
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 3 cut(s) 406, 542, 548
NciI CCSGG 1 cut(s) 270
NdeII GATC 2 cut(s) 471, 589
NlaIII CATG 4 cut(s) 365, 478, 691, 696
NlaIV GGNNCC 2 cut(s) 86, 793
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 714
NspV TTCGAA 1 cut(s) 135
PagI TCATGA 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 892
PctI GAATGC 2 cut(s) 712, 714
PdmI GAANNNNTTC 1 cut(s) 712
PfeI GAWTC 5 cut(s) 11, 25, 326, 421, 433
PkrI GCNGC 2 cut(s) 399, 544
PleI GAGTC 1 cut(s) 902
PpsI GAGTC 1 cut(s) 902
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 86, 793
PspPI GGNCC 2 cut(s) 64, 266
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 3 cut(s) 86, 509, 533
RsaNI GTAC 3 cut(s) 85, 508, 532
SapI GCTCTTC 1 cut(s) 892
SaqAI TTAA 2 cut(s) 764, 846
SatI GCNGC 2 cut(s) 398, 543
Sau3AI GATC 2 cut(s) 471, 589
Sau96I GGNCC 2 cut(s) 64, 266
SchI GAGTC 1 cut(s) 902
ScrFI CCNGG 2 cut(s) 254, 270
SfaNI GCATC 2 cut(s) 323, 733
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 2 cut(s) 64, 266
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 8 cut(s) 38, 49, 121, 138, 466, 840, 866, 939
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 818
StyD4I CCNGG 2 cut(s) 252, 268
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 4 cut(s) 248, 379, 490, 498
TaiI ACGT 1 cut(s) 264
TaqI TCGA 4 cut(s) 106, 135, 585, 855
TaqII GACCGA 1 cut(s) 81
TasI AATT 8 cut(s) 38, 49, 121, 138, 466, 840, 866, 939
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 5 cut(s) 11, 25, 326, 421, 433
Tru1I TTAA 2 cut(s) 764, 846
Tru9I TTAA 2 cut(s) 764, 846
TscAI CASTG 4 cut(s) 283, 382, 562, 706
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 397, 542
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 8 cut(s) 62, 306, 339, 407, 652, 840, 868, 876
TspRI CASTG 4 cut(s) 283, 382, 562, 706
VpaK11BI GGWCC 2 cut(s) 64, 266
XagI CCTNNNNNAGG 1 cut(s) 522
XapI RAATTY 5 cut(s) 38, 49, 466, 840, 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 831
XmnI GAANNNNTTC 1 cut(s) 712
XspI CTAG 1 cut(s) 818
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.