Rh5AG507200

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000567
Physical Location & Seq
Reverse (-)
85722268 .. 85722837
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG507200.1

Sequence Viewer

Length: 276 bp
ATGCTTCCAACCAATGTCAGTGTAGTAGTATGGCCGATTCAAATCTGGAGATTCAGTGTAAATATATCAACCATGAATACACTGGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACTATGAGCTTACCTGAAGCTCCTACTCCAGCATATACAGAGATTGTCTTGAATTTTCCATATAAGCTCTTCGAAAAATGCAAAAAGAGTCCGCTTAATATCACACTTGTGAACGCAGCTGAATTTGTACAAAGCCATAGCAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

6.54

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 100
AciI CCGC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 2 cut(s) 178, 248
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 255
AgsI TTSAA 2 cut(s) 41, 178
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 4 cut(s) 135, 146, 193, 245
AluI AGCT 4 cut(s) 135, 146, 193, 245
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 2 cut(s) 178, 248
AspS9I GGNCC 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 254
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 2 cut(s) 67, 138
Bpu14I TTCGAA 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bse1I ACTGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 41
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 41
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 34
BsnI GGCC 1 cut(s) 34
Bsp119I TTCGAA 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 253
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 198
BstF5I GGATG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 3 cut(s) 25, 61, 80
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 73
CviJI RGCY 6 cut(s) 34, 135, 146, 193, 245, 261
CviKI_1 RGCY 6 cut(s) 34, 135, 146, 193, 245, 261
CviQI GTAC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 162
FaeI CATG 1 cut(s) 76
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 2 cut(s) 67, 138
HaeIII GGCC 1 cut(s) 34
Hin1II CATG 1 cut(s) 76
HinfI GANTC 3 cut(s) 37, 51, 214
Hpy166II GTNNAC 2 cut(s) 101, 238
Hpy188III TCNNGA 2 cut(s) 46, 175
Hpy8I GTNNAC 2 cut(s) 101, 238
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 110, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 31, 68, 153, 168
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 187
MluCI AATT 3 cut(s) 178, 248, 271
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 2 cut(s) 32, 116
MnlI CCTC 1 cut(s) 106
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 76
NspV TTCGAA 1 cut(s) 198
OliI CACNNNNGTG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 37, 51
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 223
SetI ASST 6 cut(s) 91, 137, 142, 148, 195, 247
SfaNI GCATC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 198
SgeI CNNG 8 cut(s) 58, 85, 95, 108, 152, 167, 187, 245
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 3 cut(s) 178, 248, 271
SsiI CCGC 1 cut(s) 218
TaqI TCGA 1 cut(s) 198
TasI AATT 3 cut(s) 178, 248, 271
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 2 cut(s) 37, 51
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 25, 61, 87
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 3 cut(s) 25, 61, 87
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 2 cut(s) 178, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.