Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

42996753 .. 43002170

Gene Structure 5418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG391200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCCCCACCCAAGGACGGAGCTCCGCGTGCCGTAACCAAAATCCTAGGCGAAGGAATCAGAGCGCTAGTCACGAACGCTGTCGAGAAGGTGATGGAGGCGATGCAGGCGCCGATCTACTTCGAGAAGTACGATGTCACCGGCGACATGCCGAGGGTGCCGGAGGAGGTGATTGAGTCAATCAGGAAGAACAAGATGTGTCTGAAAGGCGGCCTGGCAACGCCGATGAGCGGCGGCGTTAGCTCGCTGAACATGCAGCTTCGATCAAAGACCATGAGAATTAAAAGCTTCTGCACGACGTCCATGTCATCTTGGTCTTGTTCTCTCCAATTGGTGAAACTTAAGAGTGCGTTGGATTTTTGTCAAGAAGTGTGGCATCCCCTAAGCTTTTATGGTTTGAAGCACGTATATGTCATCAGTTTTGAGAGAATGGATACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

147

Amino Acids

16.41

Weight (kDa)

9.1

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AatII	GACGTC	1 cut(s)	302
AccB1I	GGYRCC	2 cut(s)	109, 157
AccBSI	CCGCTC	1 cut(s)	231
AccII	CGCG	1 cut(s)	28
AciI	CCGC	4 cut(s)	26, 210, 231, 234
AcyI	GRCGYC	2 cut(s)	110, 299
AfaI	GTAC	1 cut(s)	131
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	3 cut(s)	13, 17, 230
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	6 cut(s)	23, 243, 259, 288, 387, 441
AluI	AGCT	6 cut(s)	23, 243, 259, 288, 387, 441
Alw21I	GWGCWC	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	256
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	2 cut(s)	67, 112
AsuHPI	GGTGA	4 cut(s)	103, 130, 181, 346
AvrII	CCTAGG	1 cut(s)	46
BanI	GGYRCC	2 cut(s)	109, 157
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	427
BfaI	CTAG	4 cut(s)	47, 68, 438, 442
BfoI	RGCGCY	2 cut(s)	68, 113
BfrI	CTTAAG	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	4 cut(s)	211, 232, 235, 257
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	4 cut(s)	212, 233, 236, 258
Bme1390I	CCNGG	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	111, 159
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	93, 385
Bpu10I	CCTNAGC	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	406
BsaHI	GRCGYC	2 cut(s)	110, 299
BsaJI	CCNNGG	3 cut(s)	12, 46, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 17, 230
Bse118I	RCCGGY	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	12, 46, 152
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	13, 17, 230
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	2 cut(s)	109, 157
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	141, 161
BslI	CCNNNNNNNGG	3 cut(s)	13, 17, 230
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	114, 263
BspACI	CCGC	4 cut(s)	26, 210, 231, 234
BspANI	GGCC	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	111, 159
BspT107I	GGYRCC	2 cut(s)	109, 157
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	12, 46, 152
BssMI	GATC	2 cut(s)	114, 263
BssNI	GRCGYC	2 cut(s)	110, 299
BssT1I	CCWWGG	2 cut(s)	12, 46
Bst2UI	CCWGG	1 cut(s)	215
BstACI	GRCGYC	2 cut(s)	110, 299
BstAFI	CTTAAG	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	30, 108, 245
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	2 cut(s)	68, 113
BstHHI	GCGC	2 cut(s)	67, 112
BstKTI	GATC	2 cut(s)	117, 266
BstMBI	GATC	2 cut(s)	114, 263
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 107, 157, 240, 253
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	2 cut(s)	151, 256
BstSCI	CCNGG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	30, 108, 245
CfoI	GCGC	2 cut(s)	67, 112
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	353, 388
CviAII	CATG	4 cut(s)	148, 253, 274, 304
CviJI	RGCY	7 cut(s)	23, 213, 243, 259, 288, 387, 441
CviKI_1	RGCY	7 cut(s)	23, 213, 243, 259, 288, 387, 441
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	383
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	2 cut(s)	116, 265
DpnII	GATC	2 cut(s)	114, 263
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	12, 46
Eco24I	GRGCYC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	12, 46
EcoT38I	GRGCYC	1 cut(s)	25
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	2 cut(s)	12, 46
FaeI	CATG	4 cut(s)	151, 256, 277, 307
FaiI	YATR	7 cut(s)	149, 254, 275, 305, 393, 409, 411
FatI	CATG	4 cut(s)	147, 252, 273, 303
Fnu4HI	GCNGC	4 cut(s)	211, 232, 235, 257
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	211, 232, 235, 257
FspBI	CTAG	4 cut(s)	47, 68, 438, 442
GlaI	GCGC	2 cut(s)	66, 111
GluI	GCNGC	4 cut(s)	211, 232, 235, 257
HaeII	RGCGCY	2 cut(s)	68, 113
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	141, 161
HhaI	GCGC	2 cut(s)	67, 112
Hin1I	GRCGYC	2 cut(s)	110, 299
Hin1II	CATG	4 cut(s)	151, 256, 277, 307
Hin6I	GCGC	2 cut(s)	65, 110
HinP1I	GCGC	2 cut(s)	65, 110
HindIII	AAGCTT	2 cut(s)	286, 385
HinfI	GANTC	2 cut(s)	57, 176
HpaII	CCGG	2 cut(s)	141, 161
HphI	GGTGA	4 cut(s)	103, 130, 181, 346
Hpy188I	TCNGA	2 cut(s)	62, 204
Hpy188III	TCNNGA	5 cut(s)	73, 85, 124, 184, 365
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	47, 82
HpyCH4IV	ACGT	2 cut(s)	299, 405
HpyCH4V	TGCA	3 cut(s)	106, 256, 294
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 107, 157, 240, 253
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	299, 405
Hsp92I	GRCGYC	2 cut(s)	110, 299
Hsp92II	CATG	4 cut(s)	151, 256, 277, 307
HspAI	GCGC	2 cut(s)	65, 110
KasI	GGCGCC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	114, 263
LmnI	GCTCC	2 cut(s)	20, 28
LpnPI	CCDG	6 cut(s)	92, 154, 169, 174, 200, 227
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	93, 385
MaeI	CTAG	4 cut(s)	47, 68, 438, 442
MaeII	ACGT	2 cut(s)	299, 405
MaeIII	GTNAC	3 cut(s)	34, 70, 136
MalI	GATC	2 cut(s)	116, 265
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	2 cut(s)	114, 263
MboII	GAAGA	1 cut(s)	199
MfeI	CAATTG	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	2 cut(s)	279, 329
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	4 cut(s)	91, 147, 157, 160
MseI	TTAA	2 cut(s)	282, 342
MslI	CAYNNNNRTG	1 cut(s)	408
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	2 cut(s)	141, 161
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	5 cut(s)	29, 107, 157, 240, 253
NarI	GGCGCC	1 cut(s)	110
NdeII	GATC	2 cut(s)	114, 263
NlaIII	CATG	4 cut(s)	151, 256, 277, 307
NlaIV	GGNNCC	2 cut(s)	111, 159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	70, 136
NspI	RCATGY	2 cut(s)	151, 256
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	4 cut(s)	212, 233, 236, 258
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	111, 159
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	282, 342
SatI	GCNGC	4 cut(s)	211, 232, 235, 257
Sau3AI	GATC	2 cut(s)	114, 263
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	2 cut(s)	93, 385
SfoI	GGCGCC	1 cut(s)	111
SgrAI	CRCCGGYG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	279, 329
SsiI	CCGC	4 cut(s)	26, 210, 231, 234
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	4 cut(s)	47, 68, 438, 442
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	12, 46
TaiI	ACGT	2 cut(s)	302, 408
TaqI	TCGA	3 cut(s)	84, 123, 262
TasI	AATT	2 cut(s)	279, 329
TauI	GCSGC	3 cut(s)	213, 234, 237
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	282, 342
Tru9I	TTAA	2 cut(s)	282, 342
TseFI	GTSAC	2 cut(s)	70, 136
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	70, 136
TspGWI	ACGGA	1 cut(s)	33
Vha464I	CTTAAG	1 cut(s)	341
XceI	RCATGY	2 cut(s)	151, 256
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	4 cut(s)	47, 68, 438, 442
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.