Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

55585905 .. 55586186

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG245200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCCCCCACCCAGCGACGGAGCTCTGCGTGCCGTAACCAAAATCCCCGGCGATGGAATCGGACCGCTAGTCACGAACGCTGTCGAGAAGGTGATGGAGGCGATGCAGGCGCCTGTCTACTTCGAGAAGTACGATGTCACCGGCAACATGCCGAGGGTGCCGGAGGAGGTGATTGAGTCGATCAGGAAGAACAAGATGTGTCTGAAAGGCGGGCTGGCGACGCCGATGGGCGGCGGCATTAGCTCGCTGAACATGCAGCTCCGGCGAGATCTCGATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

93

Amino Acids

10.01

Weight (kDa)

6.2

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	12 - 93	6.6e-10	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 157
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	4 cut(s)	65, 210, 231, 234
AcyI	GRCGYC	2 cut(s)	110, 221
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
AhdI	GACNNNNNGTC	1 cut(s)	68
AluBI	AGCT	3 cut(s)	23, 243, 259
AluI	AGCT	3 cut(s)	23, 243, 259
Alw21I	GWGCWC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	103, 130, 181
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	109, 157
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	47, 88, 220
BceAI	ACGGC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	2 cut(s)	68, 280
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	232, 235, 257
BlsI	GCNGC	3 cut(s)	233, 236, 258
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	111, 159
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	110, 221
BsaJI	CCNNGG	2 cut(s)	46, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 53, 230
Bse118I	RCCGGY	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	46, 152
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	109, 157
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	4 cut(s)	48, 141, 161, 262
BslI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	180, 268, 274
BspACI	CCGC	4 cut(s)	65, 210, 231, 234
BspLI	GGNNCC	2 cut(s)	111, 159
BspT107I	GGYRCC	2 cut(s)	109, 157
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	46, 152
BssMI	GATC	3 cut(s)	180, 268, 274
BssNI	GRCGYC	2 cut(s)	110, 221
BstACI	GRCGYC	2 cut(s)	110, 221
BstC8I	GCNNGC	5 cut(s)	30, 108, 212, 216, 245
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	183, 271, 277
BstMBI	GATC	3 cut(s)	180, 268, 274
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 107, 157, 220, 240, 253, 262
BstNSI	RCATGY	2 cut(s)	151, 256
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtgZI	GCGATG	2 cut(s)	66, 116
Cac8I	GCNNGC	5 cut(s)	30, 108, 212, 216, 245
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	62
CpoI	CGGWCCG	1 cut(s)	62
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	130
CspI	CGGWCCG	1 cut(s)	62
CviAII	CATG	2 cut(s)	148, 253
CviJI	RGCY	4 cut(s)	23, 214, 243, 259
CviKI_1	RGCY	4 cut(s)	23, 214, 243, 259
CviQI	GTAC	1 cut(s)	130
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	3 cut(s)	182, 270, 276
DpnII	GATC	3 cut(s)	180, 268, 274
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	25
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
FaeI	CATG	2 cut(s)	151, 256
FaiI	YATR	2 cut(s)	149, 254
FatI	CATG	2 cut(s)	147, 252
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	232, 235, 257
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	232, 235, 257
FspBI	CTAG	2 cut(s)	68, 280
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	232, 235, 257
GsaI	CCCAGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	4 cut(s)	48, 141, 161, 262
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 221
Hin1II	CATG	2 cut(s)	151, 256
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	57, 176
HpaII	CCGG	4 cut(s)	48, 141, 161, 262
HphI	GGTGA	3 cut(s)	103, 130, 181
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	62, 204
Hpy188III	TCNNGA	5 cut(s)	73, 85, 124, 184, 272
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	20, 223
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	106, 256
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 107, 157, 220, 240, 253, 262
Hsp92I	GRCGYC	2 cut(s)	110, 221
Hsp92II	CATG	2 cut(s)	151, 256
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	180, 268, 274
LmnI	GCTCC	2 cut(s)	20, 264
LpnPI	CCDG	9 cut(s)	25, 61, 92, 126, 154, 169, 174, 200, 275
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	68, 280
MaeIII	GTNAC	3 cut(s)	34, 70, 136
MalI	GATC	3 cut(s)	182, 270, 276
MboI	GATC	3 cut(s)	180, 268, 274
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	25
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	91, 147, 157, 160
MspI	CCGG	4 cut(s)	48, 141, 161, 262
MspR9I	CCNGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	7 cut(s)	29, 107, 157, 220, 240, 253, 262
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	180, 268, 274
NlaIII	CATG	2 cut(s)	151, 256
NlaIV	GGNNCC	2 cut(s)	111, 159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	70, 136
NspI	RCATGY	2 cut(s)	151, 256
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	233, 236, 258
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	111, 159
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	3 cut(s)	232, 235, 257
Sau3AI	GATC	3 cut(s)	180, 268, 274
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	5 cut(s)	25, 93, 171, 245, 261
SfaNI	GCATC	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	62
SsiI	CCGC	4 cut(s)	65, 210, 231, 234
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	68, 280
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	4 cut(s)	84, 123, 179, 273
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	70, 136
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	70, 136
TspGWI	ACGGA	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	2 cut(s)	151, 256
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	68, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.