RchiOBHm_Chr5g0074921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000567
Physical Location & Seq
Reverse (-)
80811918 .. 80812708
791 bp
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UTR
Exon/CDS
Intron
PRQ34968

Sequence Viewer

Length: 180 bp
ATGCAAGGCTCTCTTTCTCTATATATTCTTTTTCTCGGTGTGTTTTTGGCTCATACTCCAGCATATGCAGAGATTGTCTTGAATTTTCCATATAAGCTCTTCGGGAAATGCACGAGGAGTCCGCTTAATATCACACCTGTGAACACATCTGGATTTGTACAAAGCCATAGCAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.53

Weight (kDa)

9.43

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 159
AgsI TTSAA 1 cut(s) 82
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
ApoI RAATTY 1 cut(s) 82
BauI CACGAG 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 157
BspACI CCGC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 157
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 157
Csp6I GTAC 1 cut(s) 158
CviJI RGCY 4 cut(s) 9, 50, 97, 165
CviKI_1 RGCY 4 cut(s) 9, 50, 97, 165
CviQI GTAC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
FaiI YATR 8 cut(s) 22, 24, 54, 64, 66, 91, 93, 168
FalI AAGNNNNNCTT 1 cut(s) 29
FauNDI CATATG 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 42
HinfI GANTC 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 79, 103, 150
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 4, 68, 111
LguI GCTCTTC 1 cut(s) 104
LpnPI CCDG 3 cut(s) 72, 135, 150
MboII GAAGA 1 cut(s) 91
MluCI AATT 2 cut(s) 82, 175
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 1 cut(s) 108
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 137
NdeI CATATG 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 104
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 126
SchI GAGTC 1 cut(s) 127
SetI ASST 2 cut(s) 99, 139
SgeI CNNG 9 cut(s) 17, 47, 71, 91, 115, 124, 126, 149, 162
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 2 cut(s) 82, 175
SsiI CCGC 1 cut(s) 122
TasI AATT 2 cut(s) 82, 175
TatI WGTACW 1 cut(s) 157
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
XapI RAATTY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.