Rh5AG127500

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000567
Physical Location & Seq
Forward (+)
12165713 .. 12170397
4685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG127500.1

Sequence Viewer

Length: 447 bp
ATGCCCAGACCCAACGACGGAGCTCCGAGTGCCCAAAACATAATCCCCGGCGACGGAATTGGACCGCTCGTAATGAACGCCATCGAGCAAGTGATCGAGTACCTCAATATGTTTGGTTTTGATGCAATTTATCAATGCAAGGTAATTGTTAAGCTTAAGTATGCAGATCTTGTTTCCATGCTTCCAACCAATGTCAGTGTAGTAGTATGGCCGATTCAAATCTGGAGATTCAGTGTAAATATATCAACCATGAATACACTGGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACAATGAGCTTACCTGAAGAGCGTACCTCCTGGCTATTAAAATTCCAACCAATTCTAGCAACTTTTGGCTCTGGGGGACTAGAACATGATGCACTTCTTCCTATGCGTACAAGCAAATTCAATGGAAAGGGAAAACAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

148

Amino Acids

16.43

Weight (kDa)

6.56

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 277
AciI CCGC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 2 cut(s) 344, 419
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 101, 328, 412
AfiI CCNNNNNNNGG 2 cut(s) 17, 53
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 218, 424
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 3 cut(s) 23, 154, 312
AluI AGCT 3 cut(s) 23, 154, 312
Alw21I GWGCWC 1 cut(s) 25
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 344, 419
AspS9I GGNCC 2 cut(s) 62, 266
AsuC2I CCSGG 1 cut(s) 48
AvaII GGWCC 2 cut(s) 62, 266
BaeGI GKGCMC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 1 cut(s) 48
BfaI CTAG 2 cut(s) 359, 383
BfrI CTTAAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 48, 334
Bme18I GGWCC 2 cut(s) 62, 266
BmgT120I GGNCC 2 cut(s) 62, 266
BmrFI CCNGG 2 cut(s) 48, 334
BmsI GCATC 3 cut(s) 112, 283, 382
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 53
Bse1I ACTGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 17, 53
BseNI ACTGG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 34
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 17, 53
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 25, 34
Bsp143I GATC 2 cut(s) 93, 166
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 93, 166
Bst2UI CCWGG 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 315
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 293
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 96, 169
BstMBI GATC 2 cut(s) 93, 166
BstMWI GCNNNNNNNGC 2 cut(s) 29, 293
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 46, 332
BstSLI GKGCMC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 202, 238, 257
Cfr13I GGNCC 2 cut(s) 62, 266
Csp6I GTAC 3 cut(s) 100, 327, 411
CviAII CATG 3 cut(s) 178, 250, 389
CviJI RGCY 6 cut(s) 23, 154, 211, 312, 337, 372
CviKI_1 RGCY 6 cut(s) 23, 154, 211, 312, 337, 372
CviQI GTAC 3 cut(s) 100, 327, 411
DpnI GATC 2 cut(s) 95, 168
DpnII GATC 2 cut(s) 93, 166
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 62, 266
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 3 cut(s) 181, 253, 392
FaqI GGGAC 1 cut(s) 393
FatI CATG 3 cut(s) 177, 249, 388
FblI GTMKAC 1 cut(s) 277
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 25
FspBI CTAG 2 cut(s) 359, 383
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 48
Hin1II CATG 3 cut(s) 181, 253, 392
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 2 cut(s) 214, 228
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 278
Hpy99I CGWCG 2 cut(s) 20, 56
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 5 cut(s) 125, 138, 164, 287, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 293
Hsp92II CATG 3 cut(s) 181, 253, 392
Kzo9I GATC 2 cut(s) 93, 166
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 8 cut(s) 19, 61, 208, 245, 319, 330, 346, 360
LweI GCATC 3 cut(s) 112, 283, 382
MaeI CTAG 2 cut(s) 359, 383
MalI GATC 2 cut(s) 95, 168
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 93, 166
MboII GAAGA 2 cut(s) 332, 392
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 25, 34
MluCI AATT 6 cut(s) 57, 126, 144, 344, 354, 419
MmeI TCCRAC 3 cut(s) 209, 293, 373
MnlI CCTC 3 cut(s) 113, 283, 340
MseI TTAA 3 cut(s) 150, 156, 341
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 48, 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 29, 293
NciI CCSGG 1 cut(s) 48
NdeII GATC 2 cut(s) 93, 166
NlaIII CATG 3 cut(s) 181, 253, 392
PciSI GCTCTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 214, 228
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspPI GGNCC 2 cut(s) 62, 266
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 3 cut(s) 101, 328, 412
RsaNI GTAC 3 cut(s) 100, 327, 411
SacI GAGCTC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 150, 156, 341
Sau3AI GATC 2 cut(s) 93, 166
Sau96I GGNCC 2 cut(s) 62, 266
ScrFI CCNGG 2 cut(s) 48, 334
SduI GDGCHC 2 cut(s) 25, 34
SetI ASST 8 cut(s) 25, 105, 144, 156, 268, 314, 319, 332
SfaNI GCATC 3 cut(s) 112, 283, 382
SinI GGWCC 2 cut(s) 62, 266
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 6 cut(s) 57, 126, 144, 344, 354, 419
SsiI CCGC 1 cut(s) 65
SspMI CTAG 2 cut(s) 359, 383
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 46, 332
TaqI TCGA 2 cut(s) 84, 96
TasI AATT 6 cut(s) 57, 126, 144, 344, 354, 419
TfiI GAWTC 2 cut(s) 214, 228
Tru1I TTAA 3 cut(s) 150, 156, 341
Tru9I TTAA 3 cut(s) 150, 156, 341
TscAI CASTG 3 cut(s) 202, 238, 264
TspDTI ATGAA 2 cut(s) 89, 266
TspGWI ACGGA 2 cut(s) 33, 69
TspRI CASTG 3 cut(s) 202, 238, 264
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 62, 266
XapI RAATTY 2 cut(s) 344, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 2 cut(s) 359, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.