Rorug05G0159200

Cenp-O kinetochore centromere component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000567
Physical Location & Seq
Forward (+)
14790816 .. 14791800
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0159200.1

Sequence Viewer

Length: 294 bp
ATGTTTGGTCTTGATTTCCAGGATACTGTTGTTGATGCCGGGATATTTGATGGGTCTTTAGGCATCATTTCTGTGGTATCTGCATTGAAGGTTTTGAGTATCAATGGAAAATTGGGAGAACTAAAGCGGCCGTTTGAGGTAATAGCATTTAGTGATCAAGGAGTAAGGTTTCAATCTACATTCATAGGAAGTGCTTCTGTAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CENP-O

Protein Analysis

97

Amino Acids

10.43

Weight (kDa)

6.07

Isoelectric Point (pI)

25.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 1 cut(s) 207
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 3 cut(s) 88, 173, 256
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
AoxI GGCC 2 cut(s) 128, 262
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 16
BclI TGATCA 1 cut(s) 154
BcnI CCSGG 1 cut(s) 40
BfaI CTAG 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 20, 40
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 2 cut(s) 20, 40
BmsI GCATC 2 cut(s) 25, 72
BpuMI CCSGG 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 215, 275
BseBI CCWGG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 215, 275
BseX3I CGGCCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 130, 264
BsiEI CGRYCG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 39
BsnI GGCC 2 cut(s) 130, 264
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 130, 264
BsrI ACTGG 2 cut(s) 215, 275
BssMI GATC 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 28
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 18, 38
BstSFI CTRYAG 1 cut(s) 198
BstZI CGGCCG 1 cut(s) 128
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 130, 264
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 268
CviJI RGCY 3 cut(s) 130, 203, 264
CviKI_1 RGCY 3 cut(s) 130, 203, 264
CviQI GTAC 1 cut(s) 268
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 128
EagI CGGCCG 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 128
Eco52I CGGCCG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 1 cut(s) 185
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 1 cut(s) 292
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 2 cut(s) 130, 264
HapII CCGG 1 cut(s) 39
HinfI GANTC 1 cut(s) 246
HpaII CCGG 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 83, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 7 cut(s) 5, 32, 52, 189, 228, 256, 278
LweI GCATC 2 cut(s) 25, 72
MaeI CTAG 1 cut(s) 292
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MluCI AATT 2 cut(s) 110, 207
MnlI CCTC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 193
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 20, 40
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 246
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 71
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 20, 40
SetI ASST 4 cut(s) 93, 141, 170, 205
SfaNI GCATC 2 cut(s) 25, 72
SfcI CTRYAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 2 cut(s) 110, 207
SsiI CCGC 1 cut(s) 127
SspMI CTAG 1 cut(s) 292
StyD4I CCNGG 2 cut(s) 18, 38
TaaI ACNGT 1 cut(s) 28
TasI AATT 2 cut(s) 110, 207
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 246
TscAI CASTG 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.