Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

276984 .. 278646

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGGCGATGCATGCGCCGGTTTACTTCGGGAAGTACGATGTCACCGGCAAGATGCCGAGGGTGCCGGATGAGACCAGGCATGACAACGTCGACATTGTGGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTTGAGCACGAGATCATTCCTGGAGTTGTTGAAAGCCTTAAAGAAAAGGAAGCAACATGGATAAGAGTCCAAGGAGGAGGAGAAAGAGTGGAAGCTGTCAAGGAGGAAAGACGTGAGGCATGGCACGCTAAAAAGAAATTGAAGGGACTTTACAAGGGTCAAGGGCAGCATTCTCAGAGAGTATCCGCTATATCTGGCTCTTCTTCCAAACGTCTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

120

Amino Acids

13.46

Weight (kDa)

7.99

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	38, 131
AgsI	TTSAA	2 cut(s)	170, 280
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	77, 157
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	3 cut(s)	37, 115, 137
AvaI	CYCGRG	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	79, 159
BciVI	GTATCC	1 cut(s)	331
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmcAI	AGTACT	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	79, 159
BmeT110I	CYCGRG	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	79, 159
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	59, 120, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse118I	RCCGGY	2 cut(s)	19, 47
BseBI	CCWGG	2 cut(s)	79, 159
BseDI	CCNNGG	3 cut(s)	59, 120, 208
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	228, 231
BseXI	GCAGC	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	20, 48, 68
BslFI	GGGAC	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	105, 150
BspACI	CCGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	66
BspQI	GCTCTTC	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	68
BsrFI	RCCGGY	2 cut(s)	19, 47
BssAI	RCCGGY	2 cut(s)	19, 47
BssECI	CCNNGG	3 cut(s)	59, 120, 208
BssMI	GATC	2 cut(s)	105, 150
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	79, 159
Bst6I	CTCTTC	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	15, 264
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	108, 153
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	105, 150
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 64, 263
BstNI	CCWGG	2 cut(s)	79, 159
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	77, 157
BstV1I	GCAGC	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	15, 264
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	2 cut(s)	19, 47
Csp6I	GTAC	2 cut(s)	37, 130
CviAII	CATG	4 cut(s)	14, 83, 195, 258
CviJI	RGCY	4 cut(s)	139, 174, 233, 336
CviKI_1	RGCY	4 cut(s)	139, 174, 233, 336
CviQI	GTAC	2 cut(s)	37, 130
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	107, 152
DpnII	GATC	2 cut(s)	105, 150
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	77, 157
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	17, 86, 198, 261
FaiI	YATR	5 cut(s)	15, 84, 196, 259, 329
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	4 cut(s)	13, 82, 194, 257
FbaI	TGATCA	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	305
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	180
HapII	CCGG	3 cut(s)	20, 48, 68
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	4 cut(s)	17, 86, 198, 261
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	3 cut(s)	20, 48, 68
HphI	GGTGA	3 cut(s)	37, 115, 137
Hpy166II	GTNNAC	2 cut(s)	25, 94
Hpy188I	TCNGA	2 cut(s)	315, 354
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	2 cut(s)	25, 94
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	274
HpyCH4IV	ACGT	3 cut(s)	90, 250, 349
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 64, 263
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	3 cut(s)	90, 250, 349
Hsp92II	CATG	4 cut(s)	17, 86, 198, 261
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	105, 150
LguI	GCTCTTC	1 cut(s)	343
LpnPI	CCDG	9 cut(s)	33, 61, 64, 81, 91, 94, 144, 171, 318
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	3 cut(s)	90, 250, 349
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	107, 152
MboI	GATC	2 cut(s)	105, 150
MboII	GAAGA	2 cut(s)	330, 333
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	6 cut(s)	54, 115, 206, 209, 235, 247
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	3 cut(s)	20, 48, 68
MspR9I	CCNGG	2 cut(s)	79, 159
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	79, 159
MwoI	GCNNNNNNNGC	3 cut(s)	14, 64, 263
NdeII	GATC	2 cut(s)	105, 150
NlaIII	CATG	4 cut(s)	17, 86, 198, 261
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	307
PflFI	GACNNNGTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	77, 157
PspGI	CCWGG	2 cut(s)	77, 157
PspN4I	GGNNCC	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	38, 131
RsaNI	GTAC	2 cut(s)	37, 130
RseI	CAYNNNNRTG	1 cut(s)	101
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	105, 150
ScaI	AGTACT	1 cut(s)	131
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	79, 159
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	4 cut(s)	93, 235, 253, 352
SfaNI	GCATC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	77, 157
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	3 cut(s)	93, 253, 352
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	275
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.