Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326981.1

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Forward (+)

356 .. 874

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggctcgaagaacgataccgatcctccgccacctcctaacaaagccccgacccggcgtcagggcccaaacccgatcggtcacctacatgccccgacccggcgacggagctccgcgcgccgtgactctaatccccggcgacggaatcggaccgcttgtcacgaacgccgtggagcaggtgatggaggcgatgcacgcgccggtctacttcgagaagtacgaggtcaccggcgacatgccgagggtgccggaggaggtgatcgagtcgatcaggaagaacaaggtgtgcctgaaaggcgggctggcgacgccgatgggcggcggcgtcaactcgctgaacatgcagctccggcgagatctcgatctctatgcctcgctcgtcaactgcttcaatctgcgtggcttgcagaccaagcatgacaacgtcgacattgtggtgatcagggagaacaccgagggcgagtactcggggctcgagcacgaggtcattcctggagtcgttgaaagccttaaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

172

Amino Acids

18.95

Weight (kDa)

7.81

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	204, 426
AccII	CGCG	3 cut(s)	115, 117, 197
AciI	CCGC	6 cut(s)	28, 113, 152, 297, 318, 321
AclWI	GGATC	1 cut(s)	16
AcyI	GRCGYC	3 cut(s)	57, 308, 324
AfaI	GTAC	2 cut(s)	218, 464
AfiI	CCNNNNNNNGG	6 cut(s)	53, 60, 98, 104, 140, 317
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	391, 503
AhdI	GACNNNNNGTC	2 cut(s)	56, 155
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	2 cut(s)	110, 346
AluI	AGCT	2 cut(s)	110, 346
Alw21I	GWGCWC	2 cut(s)	112, 480
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	2 cut(s)	466, 473
AoxI	GGCC	1 cut(s)	63
ApaI	GGGCCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	343
AspLEI	GCGC	3 cut(s)	117, 119, 199
AspS9I	GGNCC	3 cut(s)	63, 64, 149
AsuC2I	CCSGG	3 cut(s)	54, 99, 135
AsuHPI	GGTGA	5 cut(s)	73, 190, 217, 268, 448
AvaI	CYCGRG	2 cut(s)	466, 473
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	3 cut(s)	67, 112, 474
BauI	CACGAG	1 cut(s)	479
Bbv12I	GWGCWC	2 cut(s)	112, 480
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	175, 307
BceAI	ACGGC	2 cut(s)	104, 152
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	3 cut(s)	54, 99, 135
BfrI	CTTAAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	166
BglI	GCCNNNNNGGC	1 cut(s)	294
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	3 cut(s)	319, 322, 344
BlsI	GCNGC	3 cut(s)	320, 323, 345
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	4 cut(s)	54, 99, 135, 492
Bme18I	GGWCC	1 cut(s)	149
BmeRI	GACNNNNNGTC	2 cut(s)	56, 155
BmeT110I	CYCGRG	2 cut(s)	466, 473
BmgT120I	GGNCC	3 cut(s)	63, 64, 149
BmiI	GGNNCC	2 cut(s)	65, 246
BmrFI	CCNGG	4 cut(s)	54, 99, 135, 492
BmsI	GCATC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	513
BpuMI	CCSGG	3 cut(s)	54, 99, 135
BsaBI	GATNNNNATC	2 cut(s)	20, 360
BsaHI	GRCGYC	3 cut(s)	57, 308, 324
BsaJI	CCNNGG	4 cut(s)	133, 168, 239, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 60, 98, 104, 140, 317
Bse118I	RCCGGY	2 cut(s)	199, 227
Bse8I	GATNNNNATC	2 cut(s)	20, 360
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	4 cut(s)	133, 168, 239, 453
BseJI	GATNNNNATC	2 cut(s)	20, 360
BseLI	CCNNNNNNNGG	6 cut(s)	53, 60, 98, 104, 140, 317
BsePI	GCGCGC	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	3 cut(s)	115, 117, 197
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	112, 480
BsiHKCI	CYCGRG	2 cut(s)	466, 473
BsiSI	CCGG	7 cut(s)	54, 99, 135, 200, 228, 248, 349
BslI	CCNNNNNNNGG	6 cut(s)	53, 60, 98, 104, 140, 317
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	2 cut(s)	466, 473
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	4 cut(s)	67, 112, 474, 480
Bsp143I	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
BspACI	CCGC	6 cut(s)	28, 113, 152, 297, 318, 321
BspANI	GGCC	1 cut(s)	65
BspFNI	CGCG	3 cut(s)	115, 117, 197
BspLI	GGNNCC	2 cut(s)	65, 246
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	509
BsrFI	RCCGGY	2 cut(s)	199, 227
BssAI	RCCGGY	2 cut(s)	199, 227
BssECI	CCNNGG	4 cut(s)	133, 168, 239, 453
BssHII	GCGCGC	1 cut(s)	115
BssMI	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
BssNI	GRCGYC	3 cut(s)	57, 308, 324
BssSI	CACGAG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	492
BstACI	GRCGYC	3 cut(s)	57, 308, 324
BstAFI	CTTAAG	1 cut(s)	509
BstC8I	GCNNGC	5 cut(s)	117, 195, 299, 303, 404
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	2 cut(s)	79, 223
BstFNI	CGCG	3 cut(s)	115, 117, 197
BstHHI	GCGC	3 cut(s)	117, 119, 199
BstKTI	GATC	7 cut(s)	24, 77, 261, 270, 358, 364, 441
BstMBI	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 194, 244, 294, 307, 340, 349, 403, 412
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	3 cut(s)	91, 238, 343
BstPI	GGTNACC	2 cut(s)	79, 223
BstSCI	CCNGG	4 cut(s)	52, 97, 133, 490
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	3 cut(s)	115, 117, 197
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	5 cut(s)	117, 195, 299, 303, 404
CfoI	GCGC	3 cut(s)	117, 119, 199
Cfr10I	RCCGGY	2 cut(s)	199, 227
Cfr13I	GGNCC	3 cut(s)	63, 64, 149
CpoI	CGGWCCG	1 cut(s)	149
CseI	GACGC	3 cut(s)	46, 313, 316
Csp6I	GTAC	2 cut(s)	217, 463
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CspI	CGGWCCG	1 cut(s)	149
CviAII	CATG	4 cut(s)	88, 235, 340, 416
CviJI	RGCY	9 cut(s)	5, 46, 65, 110, 301, 346, 402, 472, 507
CviKI_1	RGCY	9 cut(s)	5, 46, 65, 110, 301, 346, 402, 472, 507
CviQI	GTAC	2 cut(s)	217, 463
DpnI	GATC	7 cut(s)	23, 76, 260, 269, 357, 363, 440
DpnII	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
DriI	GACNNNNNGTC	2 cut(s)	56, 155
Eam1105I	GACNNNNNGTC	2 cut(s)	56, 155
EciI	GGCGGA	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	3 cut(s)	67, 112, 474
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	110
Eco88I	CYCGRG	2 cut(s)	466, 473
Eco91I	GGTNACC	2 cut(s)	79, 223
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	63
EcoO65I	GGTNACC	2 cut(s)	79, 223
EcoRII	CCWGG	1 cut(s)	490
EcoT38I	GRGCYC	3 cut(s)	67, 112, 474
FaeI	CATG	4 cut(s)	91, 238, 343, 419
FaiI	YATR	6 cut(s)	89, 236, 341, 369, 417, 517
FatI	CATG	4 cut(s)	87, 234, 339, 415
FauI	CCCGC	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	438
FblI	GTMKAC	2 cut(s)	204, 426
Fnu4HI	GCNGC	3 cut(s)	319, 322, 344
FriOI	GRGCYC	3 cut(s)	67, 112, 474
Fsp4HI	GCNGC	3 cut(s)	319, 322, 344
GlaI	GCGC	3 cut(s)	116, 118, 198
GluI	GCNGC	3 cut(s)	319, 322, 344
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	7 cut(s)	54, 99, 135, 200, 228, 248, 349
HgaI	GACGC	3 cut(s)	46, 313, 316
HhaI	GCGC	3 cut(s)	117, 119, 199
Hin1I	GRCGYC	3 cut(s)	57, 308, 324
Hin1II	CATG	4 cut(s)	91, 238, 343, 419
Hin6I	GCGC	3 cut(s)	115, 117, 197
HinP1I	GCGC	3 cut(s)	115, 117, 197
HincII	GTYRAC	3 cut(s)	328, 382, 427
HindII	GTYRAC	3 cut(s)	328, 382, 427
HinfI	GANTC	4 cut(s)	124, 144, 263, 495
HpaII	CCGG	7 cut(s)	54, 99, 135, 200, 228, 248, 349
HphI	GGTGA	5 cut(s)	73, 190, 217, 268, 448
Hpy166II	GTNNAC	4 cut(s)	205, 328, 382, 427
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	4 cut(s)	160, 211, 271, 359
Hpy8I	GTNNAC	4 cut(s)	205, 328, 382, 427
Hpy99I	CGWCG	4 cut(s)	107, 143, 310, 428
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	193, 343, 406
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 194, 244, 294, 307, 340, 349, 403, 412
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	3 cut(s)	57, 308, 324
Hsp92II	CATG	4 cut(s)	91, 238, 343, 419
HspAI	GCGC	3 cut(s)	115, 117, 197
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
LmnI	GCTCC	4 cut(s)	107, 115, 172, 351
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	4 cut(s)	79, 121, 157, 223
MalI	GATC	7 cut(s)	23, 76, 260, 269, 357, 363, 440
MboI	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
MboII	GAAGA	2 cut(s)	21, 286
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	4 cut(s)	67, 112, 474, 480
MlyI	GAGTC	3 cut(s)	118, 272, 504
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	2 cut(s)	86, 434
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	7 cut(s)	54, 99, 135, 200, 228, 248, 349
MspR9I	CCNGG	4 cut(s)	54, 99, 135, 492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	3 cut(s)	115, 117, 197
MwoI	GCNNNNNNNGC	9 cut(s)	116, 194, 244, 294, 307, 340, 349, 403, 412
NciI	CCSGG	3 cut(s)	54, 99, 135
NdeII	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
NlaIII	CATG	4 cut(s)	91, 238, 343, 419
NlaIV	GGNNCC	2 cut(s)	65, 246
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	4 cut(s)	79, 121, 157, 223
NspI	RCATGY	3 cut(s)	91, 238, 343
PaeR7I	CTCGAG	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	166
PauI	GCGCGC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	320, 323, 345
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	3 cut(s)	118, 271, 503
PpsI	GAGTC	3 cut(s)	118, 271, 503
Psp124BI	GAGCTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	490
PspEI	GGTNACC	2 cut(s)	79, 223
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	65, 246
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	3 cut(s)	63, 64, 149
PspXI	VCTCGAGB	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	422
PteI	GCGCGC	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	218, 464
RsaNI	GTAC	2 cut(s)	217, 463
RseI	CAYNNNNRTG	2 cut(s)	86, 434
Rsr2I	CGGWCCG	1 cut(s)	149
RsrII	CGGWCCG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	3 cut(s)	319, 322, 344
Sau3AI	GATC	7 cut(s)	21, 74, 258, 267, 355, 361, 438
Sau96I	GGNCC	3 cut(s)	63, 64, 149
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	3 cut(s)	118, 272, 504
ScrFI	CCNGG	4 cut(s)	54, 99, 135, 492
SduI	GDGCHC	4 cut(s)	67, 112, 474, 480
SfaNI	GCATC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	473
SgrAI	CRCCGGYG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	86, 434
SmlI	CTYRAG	2 cut(s)	473, 509
SmoI	CTYRAG	2 cut(s)	473, 509
SsiI	CCGC	6 cut(s)	28, 113, 152, 297, 318, 321
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	4 cut(s)	52, 97, 133, 490
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	7 cut(s)	7, 210, 261, 266, 360, 426, 474
TaqII	GACCGA	1 cut(s)	67
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	2 cut(s)	321, 324
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseFI	GTSAC	4 cut(s)	79, 121, 157, 223
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	4 cut(s)	79, 121, 157, 223
TspGWI	ACGGA	2 cut(s)	120, 156
Tth111I	GACNNNGTC	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	149
XceI	RCATGY	3 cut(s)	91, 238, 343
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	2 cut(s)	204, 426
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.