Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000567

Physical Location & Seq

Genomic Coordinates Reverse (-)

52522090 .. 52523093

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCCCAGACCCAACGACGGAGCTCCGAGTGCCCAAAACATAATCCCCGGTGACGGAATTGGACCGCTCGTAATGAACGCCGTCGAGCAGGTGATCGAGGTGATGCACGCGCCGTACCTCGATCTGTTTGGTTTTGATGCAATTTATCAATGGTTAGTTCTTCGTTATCTCAGTAGGTCTACCTGTGATTCATCATTTGGTTATCCTGGTGGACCCCTTTTGTTTAAGAATTTAAATTTTGGAATTGACTTAGACAGCAGCATTGCAAGTAAGGATGCTTCTCCATTTGAACTTTTAGTAAGGATGCTTCTCCATTTGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

109

Amino Acids

11.9

Weight (kDa)

4.6

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35650
fragaria_vesca	FvH4_1g10550 FvH4_1g10550
malus_domestica	MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica	Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis	pycom02g09320
rosa_chinensis	RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata	RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora	Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii	Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa	Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha	Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana	Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	229, 235
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	17, 53
AgsI	TTSAA	2 cut(s)	290, 319
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	2 cut(s)	229, 235
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	62, 212
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	62, 103, 112
AvaII	GGWCC	2 cut(s)	62, 212
BaeGI	GKGCMC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	4 cut(s)	262, 291, 294, 323
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	270
BceAI	ACGGC	2 cut(s)	65, 97
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	48, 207
Bme18I	GGWCC	2 cut(s)	62, 212
BmgT120I	GGNCC	2 cut(s)	62, 212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	48, 207
BmsI	GCATC	4 cut(s)	93, 127, 265, 294
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 53
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	280, 309
BseLI	CCNNNNNNNGG	2 cut(s)	17, 53
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	184
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	17, 53
Bsp1286I	GDGCHC	2 cut(s)	25, 34
Bsp143I	GATC	2 cut(s)	93, 121
BspACI	CCGC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	93, 121
Bst2UI	CCWGG	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	170, 250
BstF5I	GGATG	2 cut(s)	280, 309
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	96, 124
BstMBI	GATC	2 cut(s)	93, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	46, 205
BstSLI	GKGCMC	1 cut(s)	34
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	280, 309
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	62, 212
Csp6I	GTAC	1 cut(s)	115
CviJI	RGCY	1 cut(s)	23
CviKI_1	RGCY	1 cut(s)	23
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	170, 250
DpnI	GATC	2 cut(s)	95, 123
DpnII	GATC	2 cut(s)	93, 121
DraI	TTTAAA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	62, 212
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	25
FaiI	YATR	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	259
FokI	GGATG	2 cut(s)	287, 316
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	259
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	259
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	62, 103, 112
Hpy166II	GTNNAC	2 cut(s)	180, 212
Hpy188I	TCNGA	1 cut(s)	27
Hpy8I	GTNNAC	2 cut(s)	180, 212
Hpy99I	CGWCG	2 cut(s)	20, 86
HpyCH4V	TGCA	3 cut(s)	106, 140, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	170, 250
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	93, 121
LmnI	GCTCC	2 cut(s)	20, 28
LpnPI	CCDG	6 cut(s)	19, 61, 74, 192, 196, 219
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	4 cut(s)	93, 127, 265, 294
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	95, 123
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	2 cut(s)	93, 121
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	25, 34
MluCI	AATT	5 cut(s)	57, 141, 229, 235, 243
MnlI	CCTC	2 cut(s)	91, 128
MseI	TTAA	2 cut(s)	225, 233
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	48, 207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	93, 121
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	50
PaqCI	CACCTGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	62, 212
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	225, 233
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	2 cut(s)	93, 121
Sau96I	GGNCC	2 cut(s)	62, 212
ScrFI	CCNGG	2 cut(s)	48, 207
SduI	GDGCHC	2 cut(s)	25, 34
SetI	ASST	6 cut(s)	25, 93, 102, 120, 179, 185
SfaNI	GCATC	4 cut(s)	93, 127, 265, 294
SinI	GGWCC	2 cut(s)	62, 212
SmiI	ATTTAAAT	1 cut(s)	234
Sse9I	AATT	5 cut(s)	57, 141, 229, 235, 243
SsiI	CCGC	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	46, 205
SwaI	ATTTAAAT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	84, 96, 120
TasI	AATT	5 cut(s)	57, 141, 229, 235, 243
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	225, 233
Tru9I	TTAA	2 cut(s)	225, 233
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	89, 180
TspGWI	ACGGA	2 cut(s)	33, 69
VpaK11BI	GGWCC	2 cut(s)	62, 212
XapI	RAATTY	2 cut(s)	229, 235
XmiI	GTMKAC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.