Rh2AG567800

isocitrate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
79881210 .. 79881389
180 bp
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UTR
Exon/CDS
Intron
Rh2AG567800.1

Sequence Viewer

Length: 180 bp
ATGCCCCCACCCGGCGACGAAGCTCTGCGTGCCGTAACCAAAATCCCCAACGACGGAATCAGACTGCTCGTCACGAACGCCGTCGAGAATGTGATGGAGGCAATGCACATGCCGGTTTACTTCGAGAAGTACGATGTCACCGACGAGATGCTGAGGGTGCCGGAGGAGGTGATTGAGTAG

Protein Analysis

59

Amino Acids

6.71

Weight (kDa)

4.42

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35650
fragaria_vesca FvH4_1g10550 FvH4_1g10550
malus_domestica MD02G1119700.v1.1 MD15G1233500.v1.1
prunus_persica Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1 Prupe.7G179400_v2.0.a1
pyrus_communis pycom02g09320
rosa_chinensis RchiOBHm_Chr0c39g0503111 RchiOBHm_Chr2g0097601 RchiOBHm_Chr2g0110731 RchiOBHm_Chr2g0135691 RchiOBHm_Chr2g0145421 RchiOBHm_Chr4g0395871 RchiOBHm_Chr4g0395881 RchiOBHm_Chr5g0074921 RchiOBHm_Chr6g0260871 RchiOBHm_Chr6g0268821
rosa_laevigata RLG00000013432 RLG00000014392 RLG00000016727 RLG00000026056
rosa_multiflora Rmu_co8326981.1_g000001 Rmu_sc0000104.1_g000032 Rmu_sc0002193.1_g000005 Rmu_sc0002271.1_g000027 Rmu_sc0004220.1_g000002 Rmu_sc0005347.1_g000007 Rmu_sc0006625.1_g000001 Rmu_sc0008835.1_g000001 Rmu_sc0009379.1_g000004
rosa_roxburghii Rroxscaffold_2G00144670 Rroxscaffold_2G00153630
rosa_rugosa Rorug01G0401400 Rorug02G0067700 Rorug02G0231100 Rorug03G0226800 Rorug03G0356000 Rorug04G0008700 Rorug05G0159200 Rorug05G0267100.1 Rorug05G0575000 Rorug05G0575000 Rorug06G0067200
rosa_samantha Rh1BG010200 Rh1BG010300 Rh1BG252100 Rh1DG281100 Rh2AG114000 Rh2AG259300 Rh2AG567800 Rh2BG116800 Rh2BG383600 Rh2BG456400 Rh2CG118800 Rh2CG223900 Rh2DG117800 Rh2DG267700 Rh2DG466300 Rh3DG073900 Rh4AG245200 Rh4AG258800 Rh4BG250400 Rh4BG264600 Rh5AG127500 Rh5AG128100 Rh5AG506600 Rh5AG506700 Rh5AG507200 Rh5AG507300 Rh6AG184600 Rh6BG188000 Rh6CG192200 Rh6CG209400 Rh6DG437700 Rh6DG482100 Rh7AG364600 Rh7BG391200
rosa_wichuraiana Rw2G008920 Rw3G027310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 11, 53
AhdI GACNNNNNGTC 1 cut(s) 68
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 88
BceAI ACGGC 2 cut(s) 17, 65
BcnI CCSGG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 12
BmeRI GACNNNNNGTC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 53
Bse118I RCCGGY 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 11, 53
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 12, 113, 161
BslI CCNNNNNNNGG 2 cut(s) 11, 53
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 29, 157
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 112
Csp6I GTAC 1 cut(s) 130
CviAII CATG 1 cut(s) 109
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 68
FaeI CATG 1 cut(s) 112
FaiI YATR 1 cut(s) 110
FatI CATG 1 cut(s) 108
HapII CCGG 3 cut(s) 12, 113, 161
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 57
HpaII CCGG 3 cut(s) 12, 113, 161
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 3 cut(s) 73, 85, 124
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 4 cut(s) 20, 56, 86, 146
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 157
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 1 cut(s) 112
LpnPI CCDG 3 cut(s) 25, 126, 174
LweI GCATC 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 34, 70, 136
MnlI CCTC 4 cut(s) 91, 147, 157, 160
MspI CCGG 3 cut(s) 12, 113, 161
MspR9I CCNGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 29, 157
NciI CCSGG 1 cut(s) 12
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 70, 136
NspI RCATGY 1 cut(s) 112
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 138
PfeI GAWTC 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 159
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 12
SetI ASST 2 cut(s) 25, 171
SfaNI GCATC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 10
TaqI TCGA 2 cut(s) 84, 123
TfiI GAWTC 1 cut(s) 57
TseFI GTSAC 2 cut(s) 70, 136
Tsp45I GTSAC 2 cut(s) 70, 136
TspGWI ACGGA 1 cut(s) 69
XceI RCATGY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.